CGI_10018464 (Crassostrea gigas)
SMAD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03165 (MH1) IPR003619 CGI_10018464 T324420_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Smad4
M05889_2.00 		Mus musculus
KCYAGACR
YGTCTRGM		 SMiLE-seq
Isakova et al.(2017)
Smad4 		0.911 0.911
Med
M06447_2.00 		Drosophila melanogaster
KCGBCDKKSHVT
ABDSMMHGVCGM		 B1H
Zhu et al.(2011)
Med_FlyReg_FBgn0011655 		0.911 0.911
SMAD4
M09377_2.00 		Homo sapiens
DRGTGNSAGACWN
NWGTCTSNCACYH		 Misc
Kulakovskiy et al.(2013)
SMAD4_HUMAN.H11MO.0.B 		0.911 0.911
Smad4
M09382_2.00 		Mus musculus
DGWGNBAGVCWN
NWGBCTVNCWCH		 Misc
Kulakovskiy et al.(2013)
SMAD4_MOUSE.H11MO.0.A 		0.911 0.911
SMAD4
M09634_2.00 		Homo sapiens
NNNYGTCTGS
SCAGACRNNN		 Misc
Heinz et al.(2010)
ESC-SMAD4_GSE29422 		0.911 0.911
Med
M09693_2.00 		Drosophila melanogaster
YYBYVYCTGYY
RRCAGRBRVRR		 Misc
Kulakovskiy et al.(2009)
Med 		0.911 0.911
SMAD4
M11275_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q4 		0.911 0.911
SMAD4
M11276_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6_01 		0.911 0.911
SMAD4
M11277_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SMAD4_Q6 		0.911 0.911
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EKC24133 SMAD 1 56

Links

Other SMAD family TFs
Other Crassostrea gigas TFs

122 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGLB014287 Biomphalaria glabrata BGLB014287 I 0.946
Ocbimv22032358m.g Octopus bimaculoides Ocbimv22032358m.g I 0.946
ISCW018468 Ixodes scapularis ISCW018468 I 0.929
PPAI002168 Phlebotomus papatasi PPAI002168 I 0.929
LLOJ008806 Lutzomyia longipalpis LLOJ008806 I 0.929
GL23637 Drosophila persimilis FBgn0161227 I 0.911
GI23400 Drosophila mojavensis FBgn0146126 I 0.911
GH18642 Drosophila grimshawi FBgn0126109 I 0.911
GM16436 Drosophila sechellia FBgn0171351 I 0.911
GE10952 Drosophila yakuba FBgn0228782 I 0.911
TC010848 Tribolium castaneum TC010848 I 0.911
GG11819 Drosophila erecta FBgn0104114 I 0.911
GK11724 Drosophila willistoni FBgn0213735 I 0.911
GJ23092 Drosophila virilis FBgn0210194 I 0.911
Med Drosophila melanogaster FBgn0011655 D 0.911
ENSSTOG00000028580 Ictidomys tridecemlineatus ENSSTOG00000028580 I 0.911
SMAD4 Sus scrofa ENSSSCG00000004524 I 0.911
ENSSHAG00000010344 Sarcophilus harrisii ENSSHAG00000010344 I 0.911
SMAD4 Tupaia belangeri ENSTBEG00000014105 I 0.911
ENSTSYG00000009792 Tarsius syrichta ENSTSYG00000009792 I 0.911
Smad4 Rattus norvegicus ENSRNOG00000051965 I 0.911
YQE_06624 Dendroctonus ponderosae YQE_06624 I 0.911
SMAD4 Vicugna pacos ENSVPAG00000006757 I 0.911
GA14643 Drosophila pseudoobscura FBgn0074670 I 0.911
Brh_R010414 Buceros rhinoceros Brh_R010414 I 0.911
LCUP007928 Lucilia cuprina LCUP007928 I 0.911
AAH84196 Xenopus laevis AAH84196 I 0.911
Pvit_01119 Pogona vitticeps Pvit_01119 I 0.911
LDEC015949 Leptinotarsa decemlineata LDEC015949 I 0.911
smad4.1 Xenopus tropicalis XB-GENE-485691 I 0.911
MDOA012885 Musca domestica MDOA012885 I 0.911
AALB009485 Anopheles albimanus AALB009485 I 0.911
smad4.1.L Xenopus laevis XB-GENE-865543 I 0.911
Ogr14199 Ophisaurus gracilis Ogr14199 I 0.911
Ogr06720 Ophisaurus gracilis Ogr06720 I 0.911
Cmyd_10005540 Chelonia mydas Cmyd_10005540 I 0.911
SMAD4 Pan troglodytes ENSPTRG00000010028 I 0.911
Alligator_sinensis_CCG008910.1 Alligator sinensis Alligator_sinensis_CCG008910.1 I 0.911
ENSP00000341551-D1 Bos grunniens ENSP00000341551-D1 I 0.911
ENSP00000381452 Macaca fascicularis ENSP00000381452 I 0.911
Myotis_brandtii_Smad4_10005924 Myotis brandtii Myotis_brandtii_Smad4_10005924 I 0.911
Gfo_R016223 Geospiza fortis Gfo_R016223 I 0.911
Gfo_R011803 Geospiza fortis Gfo_R011803 I 0.911
Afo_R008709 Aptenodytes forsteri Afo_R008709 I 0.911
GF22974 Drosophila ananassae FBgn0099968 I 0.911
SMAD4 Echinops telfairi ENSETEG00000007750 I 0.911
SMAD4 Equus caballus ENSECAG00000017857 I 0.911
SMAD4 Dasypus novemcinctus ENSDNOG00000005063 I 0.911
ENSPSIG00000014614 Pelodiscus sinensis ENSPSIG00000014614 I 0.911
SMAD4 Felis catus ENSFCAG00000005257 I 0.911
SMAD4 Homo sapiens ENSG00000141646 D 0.911
SMAD4 Macaca mulatta ENSMMUG00000018334 I 0.911
SMAD4 Myotis lucifugus ENSMLUG00000013944 I 0.911
SMAD4 Loxodonta africana ENSLAFG00000012595 I 0.911
SMAD4 Gorilla gorilla ENSGGOG00000013662 I 0.911
SMAD4 Cavia porcellus ENSCPOG00000006470 I 0.911
SMAD4 Callithrix jacchus ENSCJAG00000001910 I 0.911
SMAD4 Anolis carolinensis ENSACAG00000010186 I 0.911
CapteG179368 Capitella teleta CapteG179368 I 0.911
ADAC007516 Anopheles darlingi ADAC007516 I 0.911
ACEP19585 Atta cephalotes ACEP19585 I 0.911
ENSAMEG00000002899 Ailuropoda melanoleuca ENSAMEG00000002899 I 0.911
ENSAPLG00000003924 Anas platyrhynchos ENSAPLG00000003924 I 0.911
SMAD4 Choloepus hoffmanni ENSCHOG00000000860 I 0.911
SMAD4 Canis familiaris ENSCAFG00000000164 I 0.911
SMAD4 Bos taurus ENSBTAG00000006919 I 0.911
SMAD4 Monodelphis domestica ENSMODG00000010995 I 0.911
ENSCSAG00000018094 Chlorocebus sabaeus ENSCSAG00000018094 I 0.911
ENSOANG00000030959 Ornithorhynchus anatinus ENSOANG00000030959 I 0.911
SMAD4 Ornithorhynchus anatinus ENSOANG00000008117 I 0.911
ENSOARG00000004662 Ovis aries ENSOARG00000004662 I 0.911
SMAD4 Oryctolagus cuniculus ENSOCUG00000003929 I 0.911
SMAD4 Otolemur garnettii ENSOGAG00000012081 I 0.911
ENSMPUG00000008776 Mustela putorius furo ENSMPUG00000008776 I 0.911
SMAD4 Ochotona princeps ENSOPRG00000013601 I 0.911
ENSPPYG00000009165 Pongo abelii ENSPPYG00000009165 I 0.911
Smad4 Mus musculus ENSMUSG00000024515 D 0.911
ENSPANG00000024703 Papio anubis ENSPANG00000024703 I 0.911
ENSNLEG00000011859 Nomascus leucogenys ENSNLEG00000011859 I 0.911
SMAD4 Tetraodon nigroviridis ENSTNIG00000009050 I 0.893
SMAD4 Takifugu rubripes ENSTRUG00000014045 I 0.893
si:dkey-222b8.1 Tetraodon nigroviridis ENSTNIG00000005007 I 0.893
ENSPFOG00000019807 Poecilia formosa ENSPFOG00000019807 I 0.893
ENSONIG00000001557 Oreochromis niloticus ENSONIG00000001557 I 0.893
SMAD4 Oryzias latipes ENSORLG00000007703 I 0.893
YQE_08737 Dendroctonus ponderosae YQE_08737 I 0.893
ENSXMAG00000005051 Xiphophorus maculatus ENSXMAG00000005051 I 0.893
AMEC018109 Anopheles melas AMEC018109 I 0.875
Aqu1.215834 Amphimedon queenslandica Aqu1.215834 I 0.875
Aqu1.215833 Amphimedon queenslandica Aqu1.215833 I 0.875
TTRE_0000855901 Trichuris trichiura TTRE_0000855901 I 0.875
ENSONIG00000015035 Oreochromis niloticus ENSONIG00000015035 I 0.875
SMAD4 Sorex araneus ENSSARG00000013883 I 0.875
ENSGMOG00000013964 Gadus morhua ENSGMOG00000013964 I 0.875
WUBG_02880 Wuchereria bancrofti WUBG_02880 I 0.875
SMAD4 Danio rerio ENSDARG00000012649 I 0.875
fgenesh2_pg.scaffold_230000050 Branchiostoma floridae fgenesh2_pg.scaffold_230000050 I 0.857
ENSMEUG00000001823 Macropus eugenii ENSMEUG00000001823 I 0.857
nDi.2.2.2.g01429 Dirofilaria immitis nDi.2.2.2.g01429 I 0.857
smad4 Ciona intestinalis ENSCING00000005559 I 0.857
WBGene00241622 Onchocerca volvulus WBGene00241622 I 0.857
OFLC_0001382401 Onchocerca flexuosa OFLC_0001382401 I 0.857
ASIM_0001604001 Anisakis simplex ASIM_0001604001 I 0.857
nOo.2.0.1.g00181 Onchocerca ochengi nOo.2.0.1.g00181 I 0.857
ASU_13433 Ascaris suum ASU_13433 I 0.839
D918_00296 Trichuris suis D918_00296 N 0.821
Minc06628 Meloidogyne incognita Minc06628 I 0.804
Minc05381 Meloidogyne incognita Minc05381 I 0.804
maker-nMf.1.1.scaf02670-augustus-gene-0.3 Meloidogyne floridensis maker-nMf.1.1.scaf02670-augustus-gene-0.3 I 0.804
L889_g6780 Steinernema feltiae L889_g6780 I 0.786
Minc15475 Meloidogyne incognita Minc15475 N 0.768
genemark-nMf.1.1.scaf08549-processed-gene-0.3 Meloidogyne floridensis genemark-nMf.1.1.scaf08549-processed-gene-0.3 N 0.768
MhA1_Contig1148.frz3.fgene1 Meloidogyne hapla MhA1_Contig1148.frz3.fgene1 N 0.768
HCOI00676200 Haemonchus contortus HCOI00676200 I 0.768
L898_g17086 Steinernema monticolum L898_g17086 I 0.750
L889_g28104 Steinernema feltiae L889_g28104 I 0.750
Sjc_0030450 Schistosoma japonicum Sjc_0030450 I 0.732
SMTD_0002197901 Schistosoma mattheei SMTD_0002197901 I 0.714
SNAPOd2T00000278001 Oikopleura dioica SNAPOd2T00000278001 N 0.714
HNAJ_0000282001 Hymenolepis nana HNAJ_0000282001 N 0.714
HmN_000727600 Hymenolepis microstoma HmN_000727600 N 0.714
Smp_033950 Schistosoma mansoni Smp_033950 I 0.714