CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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chd3
(
Oryzias latipes
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
ENSORLG00000007107
T328774_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSORLP00000008921
Sox
205
253
YRELTNYKAFSQFMRPMIAKKNPKIPMSKMMTILGVKWREFSSNNPFKG
Links
Other
Sox
family TFs
Other
Oryzias latipes
TFs
41 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSTNIG00000004346
Tetraodon nigroviridis
ENSTNIG00000004346
N
0.735
chd3
Xenopus tropicalis
XB-GENE-1008908
N
0.673
CHD3
Pteropus vampyrus
ENSPVAG00000016344
N
0.653
ENSMEUG00000005852
Macropus eugenii
ENSMEUG00000005852
N
0.653
CHD5
Sus scrofa
ENSSSCG00000003366
N
0.653
CHD5
Gallus gallus
ENSGALG00000000747
N
0.653
ENSMPUG00000008872
Mustela putorius furo
ENSMPUG00000008872
N
0.626
CHD5
Macaca mulatta
ENSMMUG00000016838
N
0.622
ENSOCUG00000023865
Oryctolagus cuniculus
ENSOCUG00000023865
N
0.622
CHD4
Ochotona princeps
ENSOPRG00000003477
N
0.599
ENSSHAG00000004107
Sarcophilus harrisii
ENSSHAG00000004107
N
0.599
ENSMODG00000024829
Monodelphis domestica
ENSMODG00000024829
N
0.599
XP_002941963
Xenopus tropicalis
XP_002941963
N
0.599
CHD4
Microcebus murinus
ENSMICG00000006588
N
0.599
CHD4
Echinops telfairi
ENSETEG00000005912
N
0.599
CHD5
Echinops telfairi
ENSETEG00000004120
N
0.582
chd4b
Danio rerio
ENSDARG00000025789
N
0.537
PLICRDRAFT_179042
Plicaturopsis crispa
PLICRDRAFT_179042
I
0.531
ENSAMEG00000017006
Ailuropoda melanoleuca
ENSAMEG00000017006
N
0.527
ACEP22065
Atta cephalotes
ACEP22065
N
0.517
SINV11745
Solenopsis invicta
SINV11745
N
0.517
LDEC009474
Leptinotarsa decemlineata
LDEC009474
N
0.507
YQE_12532
Dendroctonus ponderosae
YQE_12532
N
0.492
GSTUM_00007488001
Tuber melanosporum
GSTUM_00007488001
N
0.487
GALMADRAFT_215335
Galerina marginata
GALMADRAFT_215335
I
0.474
PLEOSDRAFT_1090547
Pleurotus ostreatus
PLEOSDRAFT_1090547
I
0.462
GLOTRDRAFT_107384
Gloeophyllum trabeum
GLOTRDRAFT_107384
I
0.457
estExt_fgenesh3_kg.C_170031
Heterobasidion annosum
estExt_fgenesh3_kg.C_170031
I
0.453
HETIRDRAFT_439796
Heterobasidion irregulare
HETIRDRAFT_439796
I
0.453
SCLCIDRAFT_1214155
Scleroderma citrinum
SCLCIDRAFT_1214155
N
0.451
KGM_21779
Danaus plexippus
KGM_21779
N
0.451
CY34DRAFT_417575
Suillus luteus
CY34DRAFT_417575
I
0.451
M413DRAFT_168289
Hebeloma cylindrosporum
M413DRAFT_168289
N
0.447
K443DRAFT_674317
Laccaria amethystina
K443DRAFT_674317
N
0.442
LACBIDRAFT_297819
Laccaria bicolor
LACBIDRAFT_297819
N
0.442
BGIBMGA002931
Bombyx mori
BGIBMGA002931
N
0.440
MCINX004608
Melitaea cinxia
MCINX004608
N
0.440
MGG_00866
Magnaporthe oryzae
MGG_00866
N
0.439
PAXRUDRAFT_625911
Paxillus rubicundulus
PAXRUDRAFT_625911
N
0.436
GG13363
Drosophila erecta
FBgn0105635
N
0.426
ACYPI003297
Acyrthosiphon pisum
ACYPI003297
I
0.417