Gfo_R002593 (Geospiza fortis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Gfo_R002593 T333732_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.739 0.971
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.739 0.971
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.705 0.957
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.516 0.594
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.468 0.580
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.430 0.493
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.429 0.478
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R002593 Sox 80 148

Links

Other Sox family TFs
Other Geospiza fortis TFs

284 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BBX Anolis carolinensis ENSACAG00000006532 I 0.741
ENSFALG00000006478 Ficedula albicollis ENSFALG00000006478 I 0.741
Ogr11041 Ophisaurus gracilis Ogr11041 I 0.741
Pvit_02469 Pogona vitticeps Pvit_02469 I 0.741
ENSTGUG00000013611 Taeniopygia guttata ENSTGUG00000013611 I 0.741
ENSOARG00000018829 Ovis aries ENSOARG00000018829 I 0.739
bbx Danio rerio ENSDARG00000012699 I 0.739
BBX Oryctolagus cuniculus ENSOCUG00000001686 I 0.739
ENSCSAG00000006313 Chlorocebus sabaeus ENSCSAG00000006313 I 0.739
BBX Dasypus novemcinctus ENSDNOG00000013923 I 0.739
BBX Cavia porcellus ENSCPOG00000003575 I 0.739
BBX Canis familiaris ENSCAFG00000009867 I 0.739
ENSPANG00000018335 Papio anubis ENSPANG00000018335 I 0.739
BBX Ochotona princeps ENSOPRG00000017013 I 0.739
BBX Callithrix jacchus ENSCJAG00000004843 I 0.739
Bbx Dipodomys ordii ENSDORG00000008169 I 0.739
BBX Otolemur garnettii ENSOGAG00000008056 I 0.739
ENSNLEG00000003524 Nomascus leucogenys ENSNLEG00000003524 I 0.739
BBX Macaca mulatta ENSMMUG00000008787 I 0.739
BBX Homo sapiens ENSG00000114439 D 0.739
BBX Gorilla gorilla ENSGGOG00000028441 I 0.739
BBX Meleagris gallopavo ENSMGAG00000014384 I 0.739
ENSLACG00000001134 Latimeria chalumnae ENSLACG00000001134 I 0.739
BBX Monodelphis domestica ENSMODG00000001748 I 0.739
ENSMPUG00000009907 Mustela putorius furo ENSMPUG00000009907 I 0.739
BBX Equus caballus ENSECAG00000023413 I 0.739
BBX Bos taurus ENSBTAG00000006893 I 0.739
BBX Erinaceus europaeus ENSEEUG00000014092 I 0.739
BBX Echinops telfairi ENSETEG00000005122 I 0.739
BBX Felis catus ENSFCAG00000007296 I 0.739
BBX Ornithorhynchus anatinus ENSOANG00000007497 I 0.739
ENSAPLG00000005336 Anas platyrhynchos ENSAPLG00000005336 I 0.739
Afo_R006638 Aptenodytes forsteri Afo_R006638 I 0.739
Alligator_sinensis_CCG019960.1 Alligator sinensis Alligator_sinensis_CCG019960.1 I 0.739
Aan_R014485 Calypte anna Aan_R014485 I 0.739
BBX Vicugna pacos ENSVPAG00000007818 I 0.739
ENSTSYG00000000857 Tarsius syrichta ENSTSYG00000000857 I 0.739
Brh_R008020 Buceros rhinoceros Brh_R008020 I 0.739
Cmyd_10015225 Chelonia mydas Cmyd_10015225 I 0.739
bbx.L Xenopus laevis XB-GENE-981431 I 0.739
XP_002932333 Xenopus tropicalis XP_002932333 I 0.739
Tal_R013114 Tyto alba Tal_R013114 I 0.739
ENSMMUP00000011518 Macaca fascicularis ENSMMUP00000011518 I 0.739
ENSBTAP00000009058-D1 Bos grunniens ENSBTAP00000009058-D1 I 0.739
bbx Tetraodon nigroviridis ENSTNIG00000008596 I 0.739
BBX Tursiops truncatus ENSTTRG00000013182 I 0.739
ENSPSIG00000015872 Pelodiscus sinensis ENSPSIG00000015872 I 0.739
BBX Sus scrofa ENSSSCG00000011943 I 0.739
ENSPPYG00000013578 Pongo abelii ENSPPYG00000013578 I 0.739
ENSAMEG00000002574 Ailuropoda melanoleuca ENSAMEG00000002574 I 0.739
BBX Pteropus vampyrus ENSPVAG00000010534 I 0.739
BBX Pan troglodytes ENSPTRG00000015187 I 0.739
BBX Procavia capensis ENSPCAG00000013443 I 0.739
ENSSHAG00000003009 Sarcophilus harrisii ENSSHAG00000003009 I 0.739
Myotis_brandtii_BBX_10016000 Myotis brandtii Myotis_brandtii_BBX_10016000 I 0.734
BBX Myotis lucifugus ENSMLUG00000007351 I 0.734
ENSGMOG00000015829 Gadus morhua ENSGMOG00000015829 I 0.732
bbx Oryzias latipes ENSORLG00000005486 I 0.732
ENSAMXG00000017656 Astyanax mexicanus ENSAMXG00000017656 I 0.732
bbx Gasterosteus aculeatus ENSGACG00000020111 I 0.732
ENSONIG00000004775 Oreochromis niloticus ENSONIG00000004775 I 0.732
BBX Loxodonta africana ENSLAFG00000006362 I 0.732
ENSPFOG00000000813 Poecilia formosa ENSPFOG00000000813 I 0.732
ENSXMAG00000009457 Xiphophorus maculatus ENSXMAG00000009457 I 0.732
Bbx Mus musculus ENSMUSG00000022641 D 0.705
Bbx Rattus norvegicus ENSRNOG00000001971 I 0.705
bbx Takifugu rubripes ENSTRUG00000003077 I 0.699
Sakowv30039572m.g Saccoglossus kowalevskii Sakowv30039572m.g I 0.672
BGLB009093 Biomphalaria glabrata BGLB009093 I 0.653
CapteG223458 Capitella teleta CapteG223458 I 0.621
CapteG39110 Capitella teleta CapteG39110 I 0.621
LotgiG89909 Lottia gigantea LotgiG89909 I 0.621
CGI_10018417 Crassostrea gigas CGI_10018417 I 0.621
ENSLOCG00000005165 Lepisosteus oculatus ENSLOCG00000005165 I 0.603
Ocbimv22001036m.g Octopus bimaculoides Ocbimv22001036m.g I 0.572
CPIJ005582 Culex quinquefasciatus CPIJ005582 I 0.572
AAEL011161 Aedes aegypti AAEL011161 I 0.572
CpipJ_CPIJ005582 Culex pipiens CpipJ_CPIJ005582 I 0.572
ENSSSCG00000025539 Sus scrofa ENSSSCG00000025539 I 0.562
ISCW010061 Ixodes scapularis ISCW010061 I 0.556
HMEL012996 Heliconius melpomene HMEL012996 I 0.555
BGIBMGA008274 Bombyx mori BGIBMGA008274 I 0.555
L798_02329 Zootermopsis nevadensis L798_02329 I 0.544
tetur23g01950 Tetranychus urticae tetur23g01950 I 0.536
Cflo_04908--XP_624175.2_APIME Camponotus floridanus Cflo_04908--XP_624175.2_APIME I 0.535
Hsal_01854--XP_624175.2_APIME Harpegnathos saltator Hsal_01854--XP_624175.2_APIME I 0.535
SINV12425 Solenopsis invicta SINV12425 I 0.535
GB48450 Apis mellifera GB48450 I 0.535
TC007499 Tribolium castaneum TC007499 I 0.520
GA16961 Drosophila pseudoobscura FBgn0076975 I 0.516
bbx Drosophila melanogaster FBgn0024251 D 0.516
MDOA012813 Musca domestica MDOA012813 I 0.516
GI21541 Drosophila mojavensis FBgn0144271 I 0.516
GE17925 Drosophila yakuba FBgn0235361 I 0.516
GK25081 Drosophila willistoni FBgn0227040 I 0.516
GJ16014 Drosophila virilis FBgn0203199 I 0.516
GM23082 Drosophila sechellia FBgn0177950 I 0.516
GF20922 Drosophila ananassae FBgn0097927 I 0.516
GG19727 Drosophila erecta FBgn0111928 I 0.516
LCUP006498 Lucilia cuprina LCUP006498 I 0.510
KGM_16790 Danaus plexippus KGM_16790 I 0.486
SMAR012744 Strigamia maritima SMAR012744 I 0.481
LDEC000948 Leptinotarsa decemlineata LDEC000948 I 0.480
YQE_06837 Dendroctonus ponderosae YQE_06837 I 0.480
ACYPI004663 Acyrthosiphon pisum ACYPI004663 I 0.474
csin104163 Clonorchis sinensis csin104163 I 0.474
T265_01499 Opisthorchis viverrini T265_01499 I 0.474
SBAD_0000026401 Soboliphyme baturini SBAD_0000026401 I 0.471
ASTEI00827 Anopheles stephensi ASTEI00827 I 0.471
ASTEI11145 Anopheles stephensi ASTEI11145 I 0.471
CLEC003268 Cimex lectularius CLEC003268 I 0.468
PHUM079880 Pediculus humanus PHUM079880 I 0.468
SMAR009315 Strigamia maritima SMAR009315 I 0.468
Sakowv30042695m.g Saccoglossus kowalevskii Sakowv30042695m.g I 0.468
ENSFCAG00000012737 Felis catus ENSFCAG00000012737 I 0.468
ENSMPUG00000007557 Mustela putorius furo ENSMPUG00000007557 I 0.468
ENSMEUG00000016625 Macropus eugenii ENSMEUG00000016625 I 0.468
Ocbimv22037932m.g Octopus bimaculoides Ocbimv22037932m.g I 0.468
CIC Homo sapiens ENSG00000079432 I 0.468
NV10910 Nasonia vitripennis NV10910 I 0.468
CIC Echinops telfairi ENSETEG00000017271 I 0.468
KGM_16941 Danaus plexippus KGM_16941 I 0.468
CIC Equus caballus ENSECAG00000011342 I 0.468
ENSLACG00000002764 Latimeria chalumnae ENSLACG00000002764 I 0.468
cic Xenopus tropicalis XB-GENE-6467430 I 0.468
MCINX015089 Melitaea cinxia MCINX015089 I 0.468
Hsal_08911--XP_624175.2_APIME Harpegnathos saltator Hsal_08911--XP_624175.2_APIME I 0.468
Cic Mus musculus ENSMUSG00000005442 D 0.468
ENSP00000160740 Macaca fascicularis ENSP00000160740 I 0.468
SPU_025292 Strongylocentrotus purpuratus SPU_025292 I 0.468
BGIBMGA010263 Bombyx mori BGIBMGA010263 I 0.468
Alligator_sinensis_CCG005631.1 Alligator sinensis Alligator_sinensis_CCG005631.1 I 0.468
Myotis_brandtii_Cic_10007129 Myotis brandtii Myotis_brandtii_Cic_10007129 I 0.468
CIC Gorilla gorilla ENSGGOG00000000192 I 0.468
ENSMICG00000015176 Microcebus murinus ENSMICG00000015176 I 0.468
Cflo_01544--XP_624175.2_APIME Camponotus floridanus Cflo_01544--XP_624175.2_APIME I 0.468
AGAP013411 Anopheles gambiae AGAP013411 I 0.468
Cmyd_10001800 Chelonia mydas Cmyd_10001800 I 0.468
ENSGMOG00000005167 Gadus morhua ENSGMOG00000005167 I 0.468
Ogr10275 Ophisaurus gracilis Ogr10275 I 0.468
ENSMLUG00000016650 Myotis lucifugus ENSMLUG00000016650 I 0.468
ENSMMUG00000012174 Macaca mulatta ENSMMUG00000012174 I 0.468
TC004697 Tribolium castaneum TC004697 I 0.468
ADAC008993 Anopheles darlingi ADAC008993 I 0.468
ENSNLEG00000010614 Nomascus leucogenys ENSNLEG00000010614 I 0.468
gw.448.64.1 Branchiostoma floridae gw.448.64.1 I 0.468
ENSP00000160740-D1 Bos grunniens ENSP00000160740-D1 I 0.468
Pvit_02876 Pogona vitticeps Pvit_02876 I 0.468
cicb Gasterosteus aculeatus ENSGACG00000009452 I 0.468
gw.46.292.1 Branchiostoma floridae gw.46.292.1 I 0.468
CpipJ_CPIJ012202 Culex pipiens CpipJ_CPIJ012202 I 0.468
ENSSTOG00000000852 Ictidomys tridecemlineatus ENSSTOG00000000852 I 0.468
cicb Oryzias latipes ENSORLG00000013259 I 0.468
ENSPANG00000009039 Papio anubis ENSPANG00000009039 I 0.468
CIC Sus scrofa ENSSSCG00000003030 I 0.468
CIC Tupaia belangeri ENSTBEG00000009044 I 0.468
CGI_10015746 Crassostrea gigas CGI_10015746 I 0.468
CIC Takifugu rubripes ENSTRUG00000007193 I 0.468
AMAM017484 Anopheles maculatus AMAM017484 I 0.468
AMEC010127 Anopheles melas AMEC010127 I 0.468
CIC Tetraodon nigroviridis ENSTNIG00000003521 I 0.468
AMEM005678 Anopheles merus AMEM005678 I 0.468
Cic Rattus norvegicus ENSRNOG00000056118 I 0.468
ENSPPYG00000010041 Pongo abelii ENSPPYG00000010041 I 0.468
ENSPFOG00000016231 Poecilia formosa ENSPFOG00000016231 I 0.468
ASTEI00261 Anopheles stephensi ASTEI00261 I 0.468
ENSPFOG00000000116 Poecilia formosa ENSPFOG00000000116 I 0.468
AQUA008168 Anopheles quadriannulatus AQUA008168 I 0.468
CIC Pan troglodytes ENSPTRG00000011051 I 0.468
ENSBTAG00000019785 Bos taurus ENSBTAG00000019785 I 0.468
CIC Pteropus vampyrus ENSPVAG00000016806 I 0.468
CPIJ012202 Culex quinquefasciatus CPIJ012202 I 0.468
AMIN003810 Anopheles minimus AMIN003810 I 0.468
CIC Tursiops truncatus ENSTTRG00000013873 I 0.468
CapteG39126 Capitella teleta CapteG39126 I 0.468
ENSOCUG00000006458 Oryctolagus cuniculus ENSOCUG00000006458 I 0.468
ACUA015009 Anopheles culicifacies ACUA015009 I 0.468
ADIR003322 Anopheles dirus ADIR003322 I 0.468
Cic Dipodomys ordii ENSDORG00000008822 I 0.468
LLOJ007756 Lutzomyia longipalpis LLOJ007756 I 0.468
ACHR006446 Anopheles christyi ACHR006446 I 0.468
AALB003439 Anopheles albimanus AALB003439 I 0.468
AARA001217 Anopheles arabiensis AARA001217 I 0.468
ENSOARG00000007985 Ovis aries ENSOARG00000007985 I 0.468
CIC Dasypus novemcinctus ENSDNOG00000047657 I 0.468
CIC Otolemur garnettii ENSOGAG00000003964 I 0.468
ENSCPOG00000004391 Cavia porcellus ENSCPOG00000004391 I 0.468
AFUN006011 Anopheles funestus AFUN006011 I 0.468
ENSONIG00000013108 Oreochromis niloticus ENSONIG00000013108 I 0.468
ENSAMXG00000018358 Astyanax mexicanus ENSAMXG00000018358 I 0.468
CIC Canis familiaris ENSCAFG00000004858 I 0.468
CIC Callithrix jacchus ENSCJAG00000012847 I 0.468
ACEP18843 Atta cephalotes ACEP18843 I 0.468
AEPI005675 Anopheles epiroticus AEPI005675 I 0.468
AFAF009600 Anopheles farauti AFAF009600 I 0.468
GB43462 Apis mellifera GB43462 I 0.468
ACEP13490 Atta cephalotes ACEP13490 I 0.466
HHAL000065-PA Halyomorpha halys HHAL000065-PA I 0.462
BGLB001462 Biomphalaria glabrata BGLB001462 I 0.462
TTRE_0000098801 Trichuris trichiura TTRE_0000098801 I 0.462
L798_08623 Zootermopsis nevadensis L798_08623 I 0.462
CIC Procavia capensis ENSPCAG00000017001 I 0.462
D918_06270 Trichuris suis D918_06270 I 0.462
D917_02434 Trichinella nativa D917_02434 I 0.462
RPRC001090 Rhodnius prolixus RPRC001090 I 0.462
cica Oryzias latipes ENSORLG00000007091 I 0.462
CRE24068 Caenorhabditis remanei CRE24068 I 0.462
TMUE_s0223001200 Trichuris muris TMUE_s0223001200 I 0.462
PAXRUDRAFT_130978 Paxillus rubicundulus PAXRUDRAFT_130978 I 0.461
CY34DRAFT_798812 Suillus luteus CY34DRAFT_798812 I 0.461
SCLCIDRAFT_120630 Scleroderma citrinum SCLCIDRAFT_120630 I 0.461
YQE_03282 Dendroctonus ponderosae YQE_03282 I 0.459
TVAG_344020 Trichomonas vaginalis TVAG_344020 I 0.459
AAEL004381 Aedes aegypti AAEL004381 I 0.459
cica Danio rerio ENSDARG00000071150 I 0.459
tetur21g00740 Tetranychus urticae tetur21g00740 I 0.459
ENSAMXG00000014362 Astyanax mexicanus ENSAMXG00000014362 I 0.459
ENSONIG00000004979 Oreochromis niloticus ENSONIG00000004979 I 0.453
Sjc_0093980 Schistosoma japonicum Sjc_0093980 I 0.450
B_00914 Schistosoma haematobium B_00914 I 0.450
SCUD_0001673101 Schistosoma curassoni SCUD_0001673101 I 0.450
ECPE_0001539401 Echinostoma caproni ECPE_0001539401 I 0.443
Smp_142600 Schistosoma mansoni Smp_142600 I 0.443
CBG00068 Caenorhabditis briggsae CBG00068 I 0.440
ENSCING00000007655 Ciona intestinalis ENSCING00000007655 I 0.439
PHUM230960 Pediculus humanus PHUM230960 I 0.439
AMIN000258 Anopheles minimus AMIN000258 I 0.436
L889_g11174 Steinernema feltiae L889_g11174 I 0.435
L893_g26751 Steinernema glaseri L893_g26751 I 0.435
L596_g5739 Steinernema carpocapsae L596_g5739 I 0.435
L898_g8837 Steinernema monticolum L898_g8837 I 0.435
MDOA004531 Musca domestica MDOA004531 I 0.430
cic Drosophila melanogaster FBgn0262582 D 0.430
GD19345 Drosophila simulans FBgn0190847 I 0.430
GK10919 Drosophila willistoni FBgn0212930 I 0.430
GE25659 Drosophila yakuba FBgn0242721 I 0.430
LCUP009387 Lucilia cuprina LCUP009387 I 0.430
GF17645 Drosophila ananassae FBgn0094663 I 0.430
GM23104 Drosophila sechellia FBgn0177972 I 0.430
GG23823 Drosophila erecta FBgn0115962 I 0.430
ANCCAN_00149 Ancylostoma caninum ANCCAN_00149 I 0.429
Hba_18941 Heterorhabditis bacteriophora Hba_18941 I 0.429
ANCDUO_05529 Ancylostoma duodenale ANCDUO_05529 I 0.429
SVUK_0000932601 Strongylus vulgaris SVUK_0000932601 I 0.429
ANCCEY_04123 Ancylostoma ceylanicum ANCCEY_04123 I 0.429
OESDEN_00065 Oesophagostomum dentatum OESDEN_00065 I 0.429
GJ23448 Drosophila virilis FBgn0210547 I 0.429
CBN17413 Caenorhabditis brenneri CBN17413 I 0.429
GH23608 Drosophila grimshawi FBgn0131065 I 0.429
gei-3 Caenorhabditis elegans WBGene00001560 D 0.429
CJA07419 Caenorhabditis japonica CJA07419 I 0.429
AMAM016153 Anopheles maculatus AMAM016153 I 0.428
AFAF016820 Anopheles farauti AFAF016820 I 0.428
nAv.1.0.1.g00032 Acanthocheilonema viteae nAv.1.0.1.g00032 I 0.427
L892_g3879 Steinernema scapterisci L892_g3879 I 0.427
nOo.2.0.1.g00287 Onchocerca ochengi nOo.2.0.1.g00287 I 0.427
SMUV_0001072601 Syphacia muris SMUV_0001072601 I 0.427
OFLC_0001331401 Onchocerca flexuosa OFLC_0001331401 I 0.427
LOAG_17202 Loa loa LOAG_17202 I 0.427
nLs.2.1.2.g07996 Litomosoides sigmodontis nLs.2.1.2.g07996 I 0.427
nDi.2.2.2.g01012 Dirofilaria immitis nDi.2.2.2.g01012 I 0.427
M404DRAFT_998162 Pisolithus tinctorius M404DRAFT_998162 I 0.427
Bm5934 Brugia malayi Bm5934 I 0.427
ASU_10300 Ascaris suum ASU_10300 I 0.427
ASIM_0000334601 Anisakis simplex ASIM_0000334601 I 0.427
WUBG_04884 Wuchereria bancrofti WUBG_04884 I 0.427
TCLT_0000608401 Thelazia callipaeda TCLT_0000608401 I 0.427
WBGene00241539 Onchocerca volvulus WBGene00241539 I 0.427
PISMIDRAFT_61363 Pisolithus microcarpus PISMIDRAFT_61363 I 0.427
EVEC_0000011601 Enterobius vermicularis EVEC_0000011601 I 0.427
AFUN003674 Anopheles funestus AFUN003674 I 0.426
POSPLDRAFT_104619 Postia placenta POSPLDRAFT_104619 I 0.421
POSPLDRAFT_98507 Postia placenta POSPLDRAFT_98507 I 0.421
SVE_0052600 Strongyloides venezuelensis SVE_0052600 I 0.419
SPAL_0001296500 Strongyloides papillosus SPAL_0001296500 I 0.419
SSTP_0000494800 Strongyloides stercoralis SSTP_0000494800 I 0.419
GNLVRS01_PISO0K11912g Millerozyma farinosa GNLVRS01_PISO0K11912g I 0.419
TVAG_010230 Trichomonas vaginalis TVAG_010230 I 0.419
SMU15002098 Schmidtea mediterranea SMU15002098 I 0.419
DEHA2E09460g Debaryomyces hansenii DEHA2E09460g I 0.419
GNLVRS01_PISO0L11913g Millerozyma farinosa GNLVRS01_PISO0L11913g I 0.419
PTRK_0000169700 Parastrongyloides trichosuri PTRK_0000169700 I 0.419
CGI_10003963 Crassostrea gigas CGI_10003963 I 0.416
D915_09544 Fasciola hepatica D915_09544 I 0.416