fgenesh1_pg.scaffold_277000017 (Physcomitrella patens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 fgenesh1_pg.scaffold_277000017 T334122_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.438 0.565
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.scaffold_277000017 Sox 111 180

Links

Other Sox family TFs
Other Physcomitrella patens TFs

101 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.500
estExt_fgenesh1_pg.C_2230007 Physcomitrella patens estExt_fgenesh1_pg.C_2230007 I 0.499
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.465
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.462
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.462
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.449
Bra002073 Brassica rapa Bra002073 I 0.448
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.444
Bo7g014280 Brassica oleracea Bo7g014280 I 0.440
GL11071 Drosophila persimilis FBgn0148681 N 0.439
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.439
HMG-1 Pisum sativum Q41026_PEA D 0.438
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.437
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.437
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.435
Pm002934 Prunus mume Pm002934 I 0.434
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.434
mgf016363m Mimulus guttatus mgf016363m I 0.431
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.431
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.431
PK11149.1 Cannabis sativa PK11149.1 I 0.431
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.430
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.430
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.430
29669.m000844 Ricinus communis 29669.m000844 I 0.430
PK08788.1 Cannabis sativa PK08788.1 N 0.428
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.428
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.427
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.427
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.427
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.427
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.427
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.427
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.427
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.427
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.427
Si007288m.g Setaria italica Si007288m.g I 0.427
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.427
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.427
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.427
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.427
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.427
OBART06G28090 Oryza barthii OBART06G28090 I 0.427
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.427
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.427
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.427
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.427
OS06G0728000 Oryza sativa OS06G0728000 I 0.427
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.426
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.426
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.426
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.426
HMGB2 Arabidopsis thaliana AT1G20693 I 0.426
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.426
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.425
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.424
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.424
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.424
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.424
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.424
OB06G35870 Oryza brachyantha OB06G35870 I 0.421
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.421
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.421
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.421
Ca_19340 Cicer arietinum Ca_19340 I 0.421
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.421
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.420
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.420
mgf000913m Mimulus guttatus mgf000913m I 0.420
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.420
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.420
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.420
Cla009093 Citrullus lanatus Cla009093 I 0.420
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.420
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.420
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.420
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.420
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.420
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.419
Ca_10725 Cicer arietinum Ca_10725 I 0.419
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.418
TCM_021706 Theobroma cacao TCM_021706 I 0.418
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.418
HMGB4 Arabidopsis thaliana AT2G17560 I 0.417
Bra011624 Brassica rapa Bra011624 I 0.417
Bo7g117500 Brassica oleracea Bo7g117500 I 0.417
Bra017723 Brassica rapa Bra017723 I 0.417
mgf009330m Mimulus guttatus mgf009330m I 0.417
Bo1g006360 Brassica oleracea Bo1g006360 I 0.417
TCM_000068 Theobroma cacao TCM_000068 I 0.416
F775_27510 Aegilops tauschii F775_27510 I 0.415
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.415
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.415
Cla018386 Citrullus lanatus Cla018386 I 0.415
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.415
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.415
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.415
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.415
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.415
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.415
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.415