estExt_fgenesh1_pg.C_2230007 (Physcomitrella patens)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 estExt_fgenesh1_pg.C_2230007 T333996_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NCU02819
M02490_2.00 		Neurospora crassa
NNHNNNNNRN
NYNNNNNDNN		 PBM
Weirauch et al.(2014)
pTH9672 		0.454 0.377
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
estExt_fgenesh1_pg.C_2230007 Sox 193 262

Links

Other Sox family TFs
Other Physcomitrella patens TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.499
OSTLU_31946 Ostreococcus lucimarinus OSTLU_31946 I 0.498
MBM_02410 Marssonina brunnea MBM_02410 I 0.497
SS1G_04584 Sclerotinia sclerotiorum SS1G_04584 I 0.491
EV44_g2383 Erysiphe necator EV44_g2383 I 0.491
SBOR_0403 Sclerotinia borealis SBOR_0403 I 0.491
OIDMADRAFT_143526 Oidiodendron maius OIDMADRAFT_143526 I 0.491
M7I_1578 Glarea lozoyensis M7I_1578 I 0.484
MCINX001064 Melitaea cinxia MCINX001064 I 0.481
KGM_13852 Danaus plexippus KGM_13852 I 0.481
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.477
MGU_02157 Metarhizium guizhouense MGU_02157 I 0.475
X797_001988 Metarhizium robertsii X797_001988 I 0.475
MBR_01483 Metarhizium brunneum MBR_01483 I 0.475
MAJ_04030 Metarhizium majus MAJ_04030 I 0.475
MANI_030028 Metarhizium anisopliae MANI_030028 I 0.475
VDBG_04589 Verticillium alfalfae VDBG_04589 I 0.469
VDAG_09161 Verticillium dahliae VDAG_09161 I 0.469
VDAG_04140 Verticillium dahliae VDAG_04140 I 0.469
VDBG_04589 Verticillium albo atrum VDBG_04589 I 0.469
ETH_00031100 Eimeria tenella ETH_00031100 I 0.468
HmN_000028000 Hymenolepis microstoma HmN_000028000 N 0.467
M437DRAFT_15090 Aureobasidium melanogenum M437DRAFT_15090 I 0.464
AUEXF2481DRAFT_32739 Aureobasidium subglaciale AUEXF2481DRAFT_32739 I 0.464
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.463
estExt_Genewise1Plus.C_51175 Fragilariopsis cylindrus estExt_Genewise1Plus.C_51175 N 0.462
Bcin01g08840 Botrytis cinerea Bcin01g08840 I 0.458
PV04_00198 Capronia semiimmersa PV04_00198 I 0.457
G647_10093 Cladophialophora carrionii G647_10093 I 0.457
PV07_09313 Cladophialophora immunda PV07_09313 I 0.457
A1O7_01726 Cladophialophora yegresii A1O7_01726 I 0.457
gw1.6.1665.1 Ostreococcus RCC809 gw1.6.1665.1 I 0.457
A1O5_06047 Cladophialophora psammophila A1O5_06047 I 0.457
Z519_04692 Cladophialophora bantiana Z519_04692 I 0.457
Z518_04911 Rhinocladiella mackenziei Z518_04911 I 0.457
GI20867 Drosophila mojavensis FBgn0143601 I 0.456
ECANG7_00770 Echinococcus canadensis ECANG7_00770 N 0.456
GJ20604 Drosophila virilis FBgn0207743 I 0.456
EmuJ_000894800 Echinococcus multilocularis EmuJ_000894800 N 0.456
GL17523 Drosophila persimilis FBgn0155126 I 0.456
GM15692 Drosophila sechellia FBgn0170608 I 0.456
GK15658 Drosophila willistoni FBgn0217663 I 0.456
GD25171 Drosophila simulans FBgn0196483 I 0.456
GH20784 Drosophila grimshawi FBgn0128247 I 0.456
GA14726 Drosophila pseudoobscura FBgn0074753 I 0.456
HmgZ Drosophila yakuba FBgn0068145 I 0.456
GF11622 Drosophila ananassae FBgn0088662 I 0.456
HmgZ Drosophila melanogaster FBgn0010228 I 0.456
GG20749 Drosophila erecta FBgn0112936 I 0.456
LCUP016801 Lucilia cuprina LCUP016801 N 0.455
SMAC_00615 Sordaria macrospora SMAC_00615 I 0.454
NEUTE1DRAFT_106544 Neurospora tetrasperma NEUTE1DRAFT_106544 I 0.454
GLRG_01394 Colletotrichum graminicola GLRG_01394 I 0.454
MGG_01641 Magnaporthe oryzae MGG_01641 I 0.454
NCU02819 Neurospora crassa NCU02819 D 0.454
PPAI002522 Phlebotomus papatasi PPAI002522 I 0.454
estExt_fgenesh3_kg.C_40082 Neurospora discreta estExt_fgenesh3_kg.C_40082 I 0.454
PODANS_1_7390 Podospora anserina PODANS_1_7390 I 0.454
CGGC5_9539 Colletotrichum gloeosporioides CGGC5_9539 I 0.454
CSUB01_00364 Colletotrichum sublineola CSUB01_00364 I 0.454
CTHT_0053790 Chaetomium thermophilum CTHT_0053790 I 0.454
CFIO01_13531 Colletotrichum fioriniae CFIO01_13531 I 0.454
CH063_04081 Colletotrichum higginsianum CH063_04081 I 0.454
TriadG64155 Trichoplax adhaerens TriadG64155 I 0.453
MYCTH_2294934 Myceliophthora thermophila MYCTH_2294934 I 0.451
PV10_01993 Exophiala mesophila PV10_01993 I 0.450
A1O1_01197 Capronia coronata A1O1_01197 I 0.450
PV08_04655 Exophiala spinifera PV08_04655 I 0.450
PV06_04154 Exophiala oligosperma PV06_04154 I 0.450
PV05_09944 Exophiala xenobiotica PV05_09944 I 0.450
PV11_09703 Exophiala sideris PV11_09703 I 0.450
BGIBMGA007393 Bombyx mori BGIBMGA007393 N 0.450
Z517_02317 Fonsecaea pedrosoi Z517_02317 I 0.450
HMPREF1120_00213 Exophiala dermatitidis HMPREF1120_00213 I 0.450
A1O3_08778 Capronia epimyces A1O3_08778 I 0.450
MDOA014797 Musca domestica MDOA014797 I 0.450
Hba_18326 Heterorhabditis bacteriophora Hba_18326 I 0.449
FFUJ_02729 Fusarium fujikuroi FFUJ_02729 I 0.448
S40288_09735 Stachybotrys chartarum S40288_09735 I 0.448
OSTLU_18991 Ostreococcus lucimarinus OSTLU_18991 N 0.448
CPUR_04901 Claviceps purpurea CPUR_04901 I 0.448
BGIBMGA005289 Bombyx mori BGIBMGA005289 I 0.447
BGHDH14_bgh04339 Blumeria graminis BGHDH14_bgh04339 I 0.447
Ssrp Drosophila pseudoobscura FBgn0078456 N 0.446
HMPREF1541_06859 Cyphellophora europaea HMPREF1541_06859 I 0.446
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.446
GL11071 Drosophila persimilis FBgn0148681 N 0.446
PK08788.1 Cannabis sativa PK08788.1 N 0.444
THITE_2121767 Thielavia terrestris THITE_2121767 I 0.444
CMQ_8074 Grosmannia clavigera CMQ_8074 I 0.441
ACRE_011600 Acremonium chrysogenum ACRE_011600 I 0.441
M438DRAFT_338286 Aureobasidium pullulans M438DRAFT_338286 I 0.439
CCM_01555 Cordyceps militaris CCM_01555 I 0.437
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.435
COCC4DRAFT_135921 Bipolaris maydis COCC4DRAFT_135921 I 0.435
fgenesh1_pm.C_scaffold_14000132 Cochliobolus heterostrophus C5 fgenesh1_pm.C_scaffold_14000132 I 0.435
MDOA009531 Musca domestica MDOA009531 N 0.435
AMEC017787 Anopheles melas AMEC017787 N 0.433
AMAM007083 Anopheles maculatus AMAM007083 N 0.433
AQUA002990 Anopheles quadriannulatus AQUA002990 N 0.433
AGAP012334 Anopheles gambiae AGAP012334 N 0.433
AFUN009599 Anopheles funestus AFUN009599 N 0.433
AARA003413 Anopheles arabiensis AARA003413 N 0.433
ACHR003270 Anopheles christyi ACHR003270 N 0.433
AALB010797 Anopheles albimanus AALB010797 N 0.433
ADIR000495 Anopheles dirus ADIR000495 N 0.433
ACOM026236 Anopheles coluzzii ACOM026236 N 0.433
AEPI002535 Anopheles epiroticus AEPI002535 N 0.433
ADAC005122 Anopheles darlingi ADAC005122 N 0.433
30131.m007272 Ricinus communis 30131.m007272 I 0.433
L898_g7743 Steinernema monticolum L898_g7743 N 0.433
L889_g16198 Steinernema feltiae L889_g16198 N 0.433
L893_g23503 Steinernema glaseri L893_g23503 N 0.433
CapteG172235 Capitella teleta CapteG172235 I 0.432
29600.m000548 Ricinus communis 29600.m000548 I 0.430
HCOI01913300 Haemonchus contortus HCOI01913300 I 0.430
HCOI01912600 Haemonchus contortus HCOI01912600 I 0.430
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.429
TTAC_0000692101 Hydatigera taeniaeformis TTAC_0000692101 N 0.427
VHEMI10573 Torrubiella hemipterigena VHEMI10573 I 0.426
HmgD Drosophila melanogaster FBgn0004362 N 0.425
GK15924 Drosophila willistoni FBgn0217926 N 0.425
SPBR_04745 Sporothrix brasiliensis SPBR_04745 I 0.425
CpipJ_CPIJ002952 Culex pipiens CpipJ_CPIJ002952 N 0.425
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.425
CPIJ002952 Culex quinquefasciatus CPIJ002952 N 0.425
GM15859 Drosophila sechellia FBgn0170775 N 0.425
GI18728 Drosophila mojavensis FBgn0141467 N 0.425
AAEL011414 Aedes aegypti AAEL011414 N 0.425
AAEL002381 Aedes aegypti AAEL002381 N 0.425
GJ21748 Drosophila virilis FBgn0208866 N 0.425
GH21124 Drosophila grimshawi FBgn0128586 N 0.425
GD11622 Drosophila simulans FBgn0183362 N 0.425
GF13265 Drosophila ananassae FBgn0090297 N 0.425
GM13209 Drosophila sechellia FBgn0168140 N 0.425
HmgD Drosophila yakuba FBgn0068146 N 0.425
GG22136 Drosophila erecta FBgn0114310 N 0.425
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.425
gw1.20.66.1 Ostreococcus RCC809 gw1.20.66.1 N 0.424
RSKR_0000733200 Rhabditophanes kr3021 RSKR_0000733200 N 0.423
ETH_00027140 Eimeria tenella ETH_00027140 I 0.423
FPSE_02664 Fusarium pseudograminearum FPSE_02664 I 0.422
MAPG_06737 Magnaporthe poae MAPG_06737 I 0.422
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.422
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.422
Cla009222 Citrullus lanatus Cla009222 I 0.422
GGTG_01518 Gaeumannomyces graminis GGTG_01518 I 0.422
CBN25379 Caenorhabditis brenneri CBN25379 I 0.421
EPUS_09213 Endocarpon pusillum EPUS_09213 I 0.421
GI18750 Drosophila mojavensis FBgn0141489 N 0.421
NECAME_16525 Necator americanus NECAME_16525 N 0.420
NBR_0000004401 Nippostrongylus brasiliensis NBR_0000004401 N 0.420
SVUK_0001798101 Strongylus vulgaris SVUK_0001798101 N 0.420
ANCDUO_10137 Ancylostoma duodenale ANCDUO_10137 N 0.420
GH21151 Drosophila grimshawi FBgn0128613 N 0.419
scaffold98-EXSNAP2012.51 Pristionchus exspectatus scaffold98-EXSNAP2012.51 N 0.418
PPA06513 Pristionchus pacificus PPA06513 N 0.418
V499_08602 Pseudogymnoascus pannorum V499_08602 I 0.418
A1O9_00742 Exophiala aquamarina A1O9_00742 I 0.418
maker-nMf.1.1.scaf04887-augustus-gene-0.6 Meloidogyne floridensis maker-nMf.1.1.scaf04887-augustus-gene-0.6 N 0.417
MhA1_Contig400.frz3.gene18 Meloidogyne hapla MhA1_Contig400.frz3.gene18 N 0.417
Minc04648 Meloidogyne incognita Minc04648 N 0.417
PV09_06887 Verruconis gallopava PV09_06887 I 0.417
Minc03634 Meloidogyne incognita Minc03634 N 0.417
HNAJ_0000793101 Hymenolepis nana HNAJ_0000793101 I 0.416
CLEC003860 Cimex lectularius CLEC003860 I 0.416
OCS_01486 Ophiocordyceps sinensis OCS_01486 I 0.416
F503_04824 Ophiostoma piceae uamh F503_04824 I 0.416
Bra002073 Brassica rapa Bra002073 I 0.415