PDK_20s1355261g001 (Phoenix dactylifera)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 PDK_20s1355261g001 T335301_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
PDK_20s1355261g001 Sox 55 124

Links

Other Sox family TFs
Other Phoenix dactylifera TFs

130 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.601
TCM_007659 Theobroma cacao TCM_007659 I 0.599
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.578
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.578
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.576
Cla009222 Citrullus lanatus Cla009222 I 0.576
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.566
MDP0000205665 Malus domestica MDP0000205665 I 0.564
Pm006054 Prunus mume Pm006054 I 0.562
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.562
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.560
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.557
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.557
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.557
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.557
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.557
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.557
OS08G0101100 Oryza sativa OS08G0101100 I 0.557
OBART08G00070 Oryza barthii OBART08G00070 I 0.557
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.557
OB08G10120 Oryza brachyantha OB08G10120 N 0.539
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.528
mgf009124m Mimulus guttatus mgf009124m N 0.525
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.525
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.520
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.517
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.502
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.498
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.498
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.497
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.495
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.494
Ca_05351 Cicer arietinum Ca_05351 I 0.493
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.491
Bra026498 Brassica rapa Bra026498 I 0.487
Bo9g014140 Brassica oleracea Bo9g014140 I 0.487
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.482
Bo2g160920 Brassica oleracea Bo2g160920 I 0.480
Bra029371 Brassica rapa Bra029371 I 0.480
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.472
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.471
mgf006113m Mimulus guttatus mgf006113m I 0.470
mgf014518m Mimulus guttatus mgf014518m I 0.470
mgf008076m Mimulus guttatus mgf008076m I 0.470
mgf016608m Mimulus guttatus mgf016608m I 0.470
30131.m007272 Ricinus communis 30131.m007272 I 0.469
Si014434m.g Setaria italica Si014434m.g N 0.465
TCM_042534 Theobroma cacao TCM_042534 I 0.465
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.464
Ca_09896 Cicer arietinum Ca_09896 I 0.464
mgf009330m Mimulus guttatus mgf009330m I 0.464
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.464
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.463
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.462
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.461
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.460
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.460
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.457
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.457
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.455
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.454
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.454
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.452
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.451
Bo8g070350 Brassica oleracea Bo8g070350 I 0.451
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.451
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.451
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.451
Bra025838 Brassica rapa Bra025838 I 0.451
Bo7g061420 Brassica oleracea Bo7g061420 I 0.451
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.451
HMGB3 Arabidopsis thaliana AT1G20696 I 0.451
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.451
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.451
Pm026798 Prunus mume Pm026798 I 0.451
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.451
HMGB7 Arabidopsis thaliana AT5G23420 N 0.450
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.450
mgf000913m Mimulus guttatus mgf000913m I 0.449
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.447
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.447
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.447
PK03866.1 Cannabis sativa PK03866.1 I 0.443
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.440
MDP0000607529 Malus domestica MDP0000607529 I 0.440
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.439
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.431
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.431
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.428
Cla009093 Citrullus lanatus Cla009093 I 0.428
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.428
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.428
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.428
29669.m000844 Ricinus communis 29669.m000844 I 0.427
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.427
fgenesh1_pg.scaffold_277000017 Physcomitrella patens fgenesh1_pg.scaffold_277000017 I 0.427
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.425
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.425
TCM_000068 Theobroma cacao TCM_000068 I 0.425
Bo5g030580 Brassica oleracea Bo5g030580 I 0.424
30170.m014386 Ricinus communis 30170.m014386 I 0.422
MDP0000275042 Malus domestica MDP0000275042 I 0.422
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.422
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.422
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.422
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.422
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.422
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.422
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.422
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.422
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.422
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.422
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.422
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.422
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.422
TCM_034406 Theobroma cacao TCM_034406 I 0.422
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.420
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.420
Pm018913 Prunus mume Pm018913 I 0.419
MDP0000757111 Malus domestica MDP0000757111 I 0.419
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.419
MDP0000362980 Malus domestica MDP0000362980 I 0.419
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.418
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.418
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.418
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.418
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.418
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.418
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.418
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.417