Eucgr.J00336 (Eucalyptus grandis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Eucgr.J00336 T334473_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.488 0.565
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Eucgr.J00336.1 Sox 116 185

Links

Other Sox family TFs
Other Eucalyptus grandis TFs

247 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.620
Cla009222 Citrullus lanatus Cla009222 I 0.620
TCM_007659 Theobroma cacao TCM_007659 I 0.617
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.615
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.587
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.580
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.580
MDP0000205665 Malus domestica MDP0000205665 I 0.578
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.578
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.576
Pm006054 Prunus mume Pm006054 I 0.576
Ca_05351 Cicer arietinum Ca_05351 I 0.558
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.543
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.542
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.539
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.539
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.537
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.535
Bra026498 Brassica rapa Bra026498 I 0.528
Bo9g014140 Brassica oleracea Bo9g014140 I 0.528
Bra029371 Brassica rapa Bra029371 I 0.528
Bo2g160920 Brassica oleracea Bo2g160920 I 0.528
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.527
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.527
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.525
30131.m007272 Ricinus communis 30131.m007272 I 0.520
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.515
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.514
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.513
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.512
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.512
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.508
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.508
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.508
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.508
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.508
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.508
OBART08G00070 Oryza barthii OBART08G00070 I 0.508
OS08G0101100 Oryza sativa OS08G0101100 I 0.508
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.508
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.507
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.503
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.495
Si014434m.g Setaria italica Si014434m.g N 0.494
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.492
OB08G10120 Oryza brachyantha OB08G10120 N 0.489
HMG-1 Pisum sativum Q41026_PEA D 0.488
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.488
TCM_042534 Theobroma cacao TCM_042534 I 0.485
Bra002073 Brassica rapa Bra002073 I 0.485
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.484
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.483
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.483
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.483
HMGB1 Arabidopsis thaliana AT3G51880 I 0.483
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.483
Bo7g101270 Brassica oleracea Bo7g101270 I 0.483
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.480
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.480
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.480
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.480
HMGB2 Arabidopsis thaliana AT1G20693 I 0.480
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.479
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.478
mgf016608m Mimulus guttatus mgf016608m I 0.474
mgf008076m Mimulus guttatus mgf008076m I 0.474
mgf014518m Mimulus guttatus mgf014518m I 0.474
mgf006113m Mimulus guttatus mgf006113m I 0.474
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.473
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.471
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.470
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.470
Bo8g081200 Brassica oleracea Bo8g081200 I 0.470
PK03866.1 Cannabis sativa PK03866.1 I 0.470
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.468
HMGB3 Arabidopsis thaliana AT1G20696 I 0.468
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.468
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.468
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.468
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.468
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.468
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.468
Bo7g061420 Brassica oleracea Bo7g061420 I 0.468
Bra037266 Brassica rapa Bra037266 I 0.468
Bo8g070350 Brassica oleracea Bo8g070350 I 0.468
Bra025838 Brassica rapa Bra025838 I 0.468
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.468
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.467
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.467
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.467
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.467
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.467
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.467
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.466
Pm002934 Prunus mume Pm002934 I 0.466
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.466
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.466
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.466
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.466
Bo7g014280 Brassica oleracea Bo7g014280 I 0.465
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.464
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.464
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.462
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.462
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.461
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.461
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.461
mgf016363m Mimulus guttatus mgf016363m I 0.460
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.460
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.460
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.459
HMGB4 Arabidopsis thaliana AT2G17560 I 0.458
Pm026798 Prunus mume Pm026798 I 0.458
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.457
MDP0000607529 Malus domestica MDP0000607529 I 0.457
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.457
mgf009330m Mimulus guttatus mgf009330m I 0.457
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.457
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.457
mgf009124m Mimulus guttatus mgf009124m N 0.456
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.454
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.453
OB06G35870 Oryza brachyantha OB06G35870 I 0.453
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.453
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.453
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.452
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.450
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.450
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.450
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.450
Ca_19340 Cicer arietinum Ca_19340 I 0.450
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.447
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.447
F775_27510 Aegilops tauschii F775_27510 I 0.447
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.446
Si007288m.g Setaria italica Si007288m.g I 0.446
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.446
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.446
mgf000913m Mimulus guttatus mgf000913m I 0.446
OS06G0728000 Oryza sativa OS06G0728000 I 0.446
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.446
OBART06G28090 Oryza barthii OBART06G28090 I 0.446
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.446
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.446
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.446
29669.m000844 Ricinus communis 29669.m000844 I 0.446
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.446
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.446
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.446
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.445
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.445
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.445
Cla009093 Citrullus lanatus Cla009093 I 0.445
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.445
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.445
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.445
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.445
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.445
Ca_09896 Cicer arietinum Ca_09896 I 0.445
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.445
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.444
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.442
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.442
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.441
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.441
Cla023817 Citrullus lanatus Cla023817 I 0.441
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.441
AMTR_s00046p00227790 Amborella trichopoda AMTR_s00046p00227790 N 0.440
Bo5g030580 Brassica oleracea Bo5g030580 I 0.440
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.439
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.439
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.439
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.439
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.439
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.439
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.439
Bo7g117500 Brassica oleracea Bo7g117500 I 0.439
Bra011624 Brassica rapa Bra011624 I 0.439
Bra017723 Brassica rapa Bra017723 I 0.439
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.439
TCM_034406 Theobroma cacao TCM_034406 I 0.439
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.439
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.439
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.439
Pm018913 Prunus mume Pm018913 I 0.439
MDP0000362980 Malus domestica MDP0000362980 I 0.439
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.439
MDP0000757111 Malus domestica MDP0000757111 I 0.439
Bo1g006360 Brassica oleracea Bo1g006360 I 0.439
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.438
Ca_10725 Cicer arietinum Ca_10725 I 0.438
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.438
TCM_000068 Theobroma cacao TCM_000068 I 0.438
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.435
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.435
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.435
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.434
PK29786.1 Cannabis sativa PK29786.1 I 0.434
TCM_021706 Theobroma cacao TCM_021706 I 0.433
HMEL015307 Heliconius melpomene HMEL015307 N 0.433
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.432
29701.m000600 Ricinus communis 29701.m000600 I 0.432
PK11149.1 Cannabis sativa PK11149.1 I 0.432
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.432
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.432
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.432
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.432
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.432
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.431
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.430
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.430
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.429
30170.m014386 Ricinus communis 30170.m014386 I 0.429
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.429
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.429
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.429
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.429
MDP0000275042 Malus domestica MDP0000275042 I 0.429
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.428
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.428
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.427
HMGB7 Arabidopsis thaliana AT5G23420 N 0.426
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.426
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.426
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.426
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.426
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.426
Si031512m.g Setaria italica Si031512m.g I 0.426
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.425
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.425
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.424
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.424
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.423
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.423
GH21151 Drosophila grimshawi FBgn0128613 N 0.423
Cla018386 Citrullus lanatus Cla018386 I 0.423
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.422
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.421
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.419
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.418
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.418
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.418
OB09G25530 Oryza brachyantha OB09G25530 I 0.417
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.417
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.417
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.417
gene00778-v1.0-hybrid Fragaria vesca gene00778-v1.0-hybrid N 0.416