Thhalv10026524m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10026524m.g T334740_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.618 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10026524m Sox 34 103
Thhalv10026525m Sox 34 103

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

249 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra011624 Brassica rapa Bra011624 I 0.716
Bra017723 Brassica rapa Bra017723 I 0.716
Bo7g117500 Brassica oleracea Bo7g117500 I 0.716
Bo1g006360 Brassica oleracea Bo1g006360 I 0.716
Bra037266 Brassica rapa Bra037266 I 0.688
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.688
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.677
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.677
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.677
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.677
HMGB4 Arabidopsis thaliana AT2G17560 I 0.665
Bo7g014280 Brassica oleracea Bo7g014280 I 0.662
Bra002073 Brassica rapa Bra002073 I 0.654
PK29786.1 Cannabis sativa PK29786.1 I 0.643
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.643
Cla023817 Citrullus lanatus Cla023817 I 0.643
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.643
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.627
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.625
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.620
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.618
HMG-1 Pisum sativum Q41026_PEA D 0.618
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.618
Pm002934 Prunus mume Pm002934 I 0.617
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.617
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.617
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.617
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.617
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.617
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.615
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.615
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.615
HMGB2 Arabidopsis thaliana AT1G20693 I 0.615
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.615
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.611
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.611
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.611
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.611
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.611
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.611
HMGB1 Arabidopsis thaliana AT3G51880 I 0.611
Bo7g101270 Brassica oleracea Bo7g101270 I 0.611
mgf016363m Mimulus guttatus mgf016363m I 0.611
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.611
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.611
Bo8g081200 Brassica oleracea Bo8g081200 I 0.611
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.611
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.610
Ca_10725 Cicer arietinum Ca_10725 I 0.610
Ca_04825 Cicer arietinum Ca_04825 I 0.609
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.609
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.609
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.609
Cla009093 Citrullus lanatus Cla009093 I 0.609
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.608
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.608
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.608
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.608
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.605
TCM_000068 Theobroma cacao TCM_000068 I 0.602
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.601
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.601
F775_27510 Aegilops tauschii F775_27510 I 0.601
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.601
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.601
Ca_19340 Cicer arietinum Ca_19340 I 0.601
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.601
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.601
OB06G35870 Oryza brachyantha OB06G35870 I 0.601
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.600
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.600
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.599
Pm026798 Prunus mume Pm026798 I 0.599
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.597
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.597
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.597
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.597
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.596
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.596
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.595
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.595
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.595
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.595
OBART06G28090 Oryza barthii OBART06G28090 I 0.595
OS06G0728000 Oryza sativa OS06G0728000 I 0.595
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.595
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.595
mgf009330m Mimulus guttatus mgf009330m I 0.595
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.595
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.595
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.595
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.595
Si007288m.g Setaria italica Si007288m.g I 0.595
MDP0000607529 Malus domestica MDP0000607529 I 0.594
Ca_09896 Cicer arietinum Ca_09896 I 0.592
MDP0000275042 Malus domestica MDP0000275042 I 0.592
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.590
TCM_021706 Theobroma cacao TCM_021706 I 0.590
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.590
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.588
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.585
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.585
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.584
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.584
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.583
29701.m000600 Ricinus communis 29701.m000600 I 0.583
PK11149.1 Cannabis sativa PK11149.1 I 0.583
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.581
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.581
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.581
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.581
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.581
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.581
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.581
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.581
TCM_034406 Theobroma cacao TCM_034406 I 0.581
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.581
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.581
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.581
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.579
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.579
mgf006113m Mimulus guttatus mgf006113m I 0.579
mgf008076m Mimulus guttatus mgf008076m I 0.579
mgf016608m Mimulus guttatus mgf016608m I 0.579
Bo8g070350 Brassica oleracea Bo8g070350 I 0.577
Bo7g061420 Brassica oleracea Bo7g061420 I 0.577
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.576
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.576
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.576
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.576
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.576
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.575
MDP0000362980 Malus domestica MDP0000362980 I 0.574
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.574
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.574
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.574
Bra025838 Brassica rapa Bra025838 I 0.574
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.574
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.574
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.574
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.574
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.574
Pm018913 Prunus mume Pm018913 I 0.574
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.574
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.574
HMGB3 Arabidopsis thaliana AT1G20696 I 0.574
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.574
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.574
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.574
Cla018386 Citrullus lanatus Cla018386 I 0.574
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.574
MDP0000757111 Malus domestica MDP0000757111 I 0.574
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.573
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.572
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.572
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.572
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.572
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.572
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.572
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.572
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.572
30170.m014386 Ricinus communis 30170.m014386 I 0.572
Ca_05351 Cicer arietinum Ca_05351 I 0.572
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.570
HMGB5 Arabidopsis thaliana AT4G35570 I 0.566
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.565
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.563
Si031512m.g Setaria italica Si031512m.g I 0.563
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.563
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.563
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.553
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.553
OB09G25530 Oryza brachyantha OB09G25530 I 0.553
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.553
mgf014518m Mimulus guttatus mgf014518m I 0.553
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.552
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.548
29669.m000844 Ricinus communis 29669.m000844 I 0.547
Bo5g030580 Brassica oleracea Bo5g030580 I 0.547
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.547
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.547
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.547
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.546
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.546
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.546
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.546
OS09G0551600 Oryza sativa OS09G0551600 I 0.546
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.546
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.543
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.541
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.540
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.540
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.540
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.540
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.540
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.539
TCM_042534 Theobroma cacao TCM_042534 I 0.534
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.532
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.524
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.522
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.522
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.516
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.513
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.512
29600.m000548 Ricinus communis 29600.m000548 I 0.512
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.510
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.509
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.508
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.504
mgf000913m Mimulus guttatus mgf000913m I 0.503
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.500
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.499
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.484
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.483
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.482
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.472
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.470
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.470
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.467
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.462
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.462
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.462
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.462
F775_30706 Aegilops tauschii F775_30706 I 0.462
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.456
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.456
MLOC_57633 Hordeum vulgare MLOC_57633 I 0.455
PK14705.1 Cannabis sativa PK14705.1 I 0.455
NCLIV_043670 Neospora caninum NCLIV_043670 I 0.454
TGME49_010410 Toxoplasma gondii TGME49_010410 I 0.454
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.454
TA04735 Theileria annulata TA04735 I 0.446
TP03_0469 Theileria parva TP03_0469 I 0.446
MTR_1g022345 Medicago truncatula MTR_1g022345 I 0.444
orange1.1g044275m.g Citrus sinensis orange1.1g044275m.g I 0.441
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.439
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.436
gene01264-v1.0-hybrid Fragaria vesca gene01264-v1.0-hybrid I 0.434
gene01265-v1.0-hybrid Fragaria vesca gene01265-v1.0-hybrid I 0.434
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.427
TCM_007659 Theobroma cacao TCM_007659 I 0.425
Pavir.J40489 Panicum virgatum Pavir.J40489 N 0.423
Pavir.J38684 Panicum virgatum Pavir.J38684 N 0.423
PK03866.1 Cannabis sativa PK03866.1 I 0.421
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.421
Cla009222 Citrullus lanatus Cla009222 I 0.418
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.418
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.417