gene18862-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene18862-v1.0-hybrid T334515_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.572 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna18862.1-v1.0-hybrid Sox 51 120

Links

Other Sox family TFs
Other Fragaria vesca TFs

254 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.625
Pm002934 Prunus mume Pm002934 I 0.614
PRUPE_ppa007518mg Prunus persica PRUPE_ppa007518mg I 0.614
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.602
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.602
Cla018386 Citrullus lanatus Cla018386 I 0.598
Gorai.002G263800 Gossypium raimondii Gorai.002G263800 I 0.597
Cucsa.067200 Cucumis sativus Cucsa.067200 I 0.597
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.593
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.592
Gorai.006G181900 Gossypium raimondii Gorai.006G181900 I 0.588
PK11149.1 Cannabis sativa PK11149.1 I 0.583
evm.TU.supercontig_11.167 Carica papaya evm.TU.supercontig_11.167 I 0.581
mgf016363m Mimulus guttatus mgf016363m I 0.581
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.577
MTR_5g024180 Medicago truncatula MTR_5g024180 I 0.577
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.577
PK29786.1 Cannabis sativa PK29786.1 I 0.576
HMGB1 Vitis vinifera VIT_08s0007g02200 I 0.574
PGSC0003DMG400008501 Solanum tuberosum PGSC0003DMG400008501 I 0.574
Eucgr.A00506 Eucalyptus grandis Eucgr.A00506 I 0.574
Si007288m.g Setaria italica Si007288m.g I 0.572
Pavir.J04920 Panicum virgatum Pavir.J04920 I 0.572
LPERR06G23570 Leersia perrieri LPERR06G23570 I 0.572
ORUFI06G30030 Oryza rufipogon ORUFI06G30030 I 0.572
Pavir.Db00040 Panicum virgatum Pavir.Db00040 I 0.572
HMG-1 Pisum sativum Q41026_PEA D 0.572
OLONG_007465 Oryza longistaminata OLONG_007465 I 0.572
ONIVA06G31070 Oryza nivara ONIVA06G31070 I 0.572
OPUNC06G25640 Oryza punctata OPUNC06G25640 I 0.572
ORGLA06G0238300 Oryza glaberrima ORGLA06G0238300 I 0.572
OS06G0728000 Oryza sativa OS06G0728000 I 0.572
OGLUM06G29480 Oryza glumaepatula OGLUM06G29480 I 0.572
OMERI06G28030 Oryza meridionalis OMERI06G28030 I 0.572
OBART06G28090 Oryza barthii OBART06G28090 I 0.572
Ca_19340 Cicer arietinum Ca_19340 I 0.571
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.570
GSMUA_AchrUn_randomG22010_001 Musa acuminata GSMUA_AchrUn_randomG22010_001 I 0.569
GSMUA_Achr9G21200_001 Musa acuminata GSMUA_Achr9G21200_001 I 0.569
GSMUA_Achr2G03630_001 Musa acuminata GSMUA_Achr2G03630_001 I 0.569
gene20487-v1.0-hybrid Fragaria vesca gene20487-v1.0-hybrid I 0.569
Cucsa.272190 Cucumis sativus Cucsa.272190 I 0.569
Cla023817 Citrullus lanatus Cla023817 I 0.569
GSMUA_Achr11G07320_001 Musa acuminata GSMUA_Achr11G07320_001 I 0.569
Ca_10725 Cicer arietinum Ca_10725 I 0.567
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.566
Sb10g030910 Sorghum bicolor Sb10g030910 I 0.566
MLOC_78556 Hordeum vulgare MLOC_78556 I 0.566
OB06G35870 Oryza brachyantha OB06G35870 I 0.566
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.566
F775_27510 Aegilops tauschii F775_27510 I 0.566
Eucgr.F03571 Eucalyptus grandis Eucgr.F03571 I 0.566
HMGB2 Arabidopsis thaliana AT1G20693 I 0.566
TRIUR3_13577 Triticum urartu TRIUR3_13577 I 0.566
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.566
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.566
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.566
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.566
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.566
Gorai.005G114500 Gossypium raimondii Gorai.005G114500 I 0.561
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.561
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.561
POPTR_0002s01000 Populus trichocarpa POPTR_0002s01000 I 0.561
Gorai.009G186800 Gossypium raimondii Gorai.009G186800 I 0.561
SapurV1A.0266s0310 Salix purpurea SapurV1A.0266s0310 I 0.561
TCM_034406 Theobroma cacao TCM_034406 I 0.561
Ciclev10002782m.g Citrus clementina Ciclev10002782m.g I 0.561
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.561
MDP0000757111 Malus domestica MDP0000757111 I 0.558
MDP0000362980 Malus domestica MDP0000362980 I 0.558
Pm018913 Prunus mume Pm018913 I 0.558
PRUPE_ppa012424mg Prunus persica PRUPE_ppa012424mg I 0.558
VIT_18s0122g01190 Vitis vinifera VIT_18s0122g01190 I 0.556
Bo8g081200 Brassica oleracea Bo8g081200 I 0.554
cassava35948.valid.m1 Manihot esculenta cassava35948.valid.m1 I 0.552
30170.m014386 Ricinus communis 30170.m014386 I 0.552
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.552
cassava18625.valid.m1 Manihot esculenta cassava18625.valid.m1 I 0.552
cassava18624.valid.m1 Manihot esculenta cassava18624.valid.m1 I 0.552
cassava18626.valid.m1 Manihot esculenta cassava18626.valid.m1 I 0.552
29701.m000600 Ricinus communis 29701.m000600 I 0.550
Lus10012252.g Linum usitatissimum Lus10012252.g I 0.550
Lus10016025.g Linum usitatissimum Lus10016025.g I 0.550
cassava42373.valid.m1 Manihot esculenta cassava42373.valid.m1 I 0.549
cassava42371.valid.m1 Manihot esculenta cassava42371.valid.m1 I 0.549
TCM_021706 Theobroma cacao TCM_021706 I 0.549
cassava44923.m1 Manihot esculenta cassava44923.m1 I 0.549
cassava42372.valid.m1 Manihot esculenta cassava42372.valid.m1 I 0.549
Bo7g014280 Brassica oleracea Bo7g014280 I 0.548
Carubv10018109m.g Capsella rubella Carubv10018109m.g I 0.547
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.547
HMGB1 Arabidopsis thaliana AT3G51880 I 0.547
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.547
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.547
GSMUA_Achr10G07270_001 Musa acuminata GSMUA_Achr10G07270_001 I 0.542
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.542
Ca_04825 Cicer arietinum Ca_04825 I 0.541
Bra002073 Brassica rapa Bra002073 I 0.540
AMTR_s00044p00160130 Amborella trichopoda AMTR_s00044p00160130 I 0.540
Bo7g101270 Brassica oleracea Bo7g101270 I 0.539
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.539
HMGB3 Arabidopsis thaliana AT1G20696 I 0.538
PGSC0003DMG400001567 Solanum tuberosum PGSC0003DMG400001567 I 0.538
Solyc02g082700.2 Solanum lycopersicum Solyc02g082700.2 I 0.538
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.536
SapurV1A.0061s0170 Salix purpurea SapurV1A.0061s0170 I 0.536
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.536
GLYMA09G33070 Glycine max GLYMA09G33070 I 0.535
GLYMA16G22060 Glycine max GLYMA16G22060 I 0.535
Cla009093 Citrullus lanatus Cla009093 I 0.534
gene13043-v1.0-hybrid Fragaria vesca gene13043-v1.0-hybrid I 0.534
Cucsa.323100 Cucumis sativus Cucsa.323100 I 0.534
Thhalv10009371m.g Eutrema salsugineum Thhalv10009371m.g I 0.534
Bostr.7128s0662 Boechera stricta Bostr.7128s0662 I 0.533
SapurV1A.0016s0600 Salix purpurea SapurV1A.0016s0600 I 0.533
PDK_20s1306741g001 Phoenix dactylifera PDK_20s1306741g001 I 0.533
Carubv10012681m.g Capsella rubella Carubv10012681m.g I 0.533
Bo7g061420 Brassica oleracea Bo7g061420 I 0.533
orange1.1g030283m.g Citrus sinensis orange1.1g030283m.g I 0.533
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.533
Cagra.6160s0027 Capsella grandiflora Cagra.6160s0027 I 0.533
Ciclev10012868m.g Citrus clementina Ciclev10012868m.g I 0.533
Bo8g070350 Brassica oleracea Bo8g070350 I 0.533
Bra025838 Brassica rapa Bra025838 I 0.533
HMGB3 Arabidopsis lyrata fgenesh2_kg.1__2258__AT1G20696.3 I 0.533
TCM_000068 Theobroma cacao TCM_000068 I 0.531
Aquca_045_00054 Aquilegia coerulea Aquca_045_00054 I 0.531
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.529
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.529
HMGB5 Arabidopsis thaliana AT4G35570 I 0.529
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.529
Gorai.001G198900 Gossypium raimondii Gorai.001G198900 I 0.529
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.529
cassava24859.valid.m1 Manihot esculenta cassava24859.valid.m1 I 0.528
VIT_04s0044g00110 Vitis vinifera VIT_04s0044g00110 I 0.528
evm.TU.supercontig_26.174 Carica papaya evm.TU.supercontig_26.174 I 0.526
MDP0000275042 Malus domestica MDP0000275042 I 0.524
Thhalv10022905m.g Eutrema salsugineum Thhalv10022905m.g I 0.523
Bra037266 Brassica rapa Bra037266 I 0.523
MDP0000607529 Malus domestica MDP0000607529 I 0.522
HMGB4 Arabidopsis thaliana AT2G17560 I 0.520
Bo1g006360 Brassica oleracea Bo1g006360 I 0.519
Bra017723 Brassica rapa Bra017723 I 0.519
Bra011624 Brassica rapa Bra011624 I 0.519
Bo7g117500 Brassica oleracea Bo7g117500 I 0.519
orange1.1g031973m.g Citrus sinensis orange1.1g031973m.g I 0.517
Ciclev10026715m.g Citrus clementina Ciclev10026715m.g I 0.517
Thhalv10009970m.g Eutrema salsugineum Thhalv10009970m.g I 0.516
PGSC0003DMG400018685 Solanum tuberosum PGSC0003DMG400018685 I 0.516
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.514
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.514
Thhalv10026524m.g Eutrema salsugineum Thhalv10026524m.g I 0.513
chr1.CM0113.560.nc Lotus japonicus chr1.CM0113.560.nc I 0.513
Ciclev10032930m.g Citrus clementina Ciclev10032930m.g I 0.510
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.510
Sb02g032140 Sorghum bicolor Sb02g032140 I 0.510
Si031512m.g Setaria italica Si031512m.g I 0.510
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.510
Pavir.Bb02550 Panicum virgatum Pavir.Bb02550 I 0.510
GLYMA06G01970 Glycine max GLYMA06G01970 I 0.509
GLYMA04G01840 Glycine max GLYMA04G01840 I 0.509
Lus10028298.g Linum usitatissimum Lus10028298.g I 0.508
mgf009330m Mimulus guttatus mgf009330m I 0.507
Ca_05351 Cicer arietinum Ca_05351 I 0.507
evm.TU.supercontig_365.4 Carica papaya evm.TU.supercontig_365.4 I 0.507
Bo5g030580 Brassica oleracea Bo5g030580 I 0.505
POPTR_0005s10440 Populus trichocarpa POPTR_0005s10440 I 0.505
PRUPE_ppa012972mg Prunus persica PRUPE_ppa012972mg I 0.505
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.505
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.505
SapurV1A.0085s0030 Salix purpurea SapurV1A.0085s0030 I 0.505
VIT_13s0067g00640 Vitis vinifera VIT_13s0067g00640 I 0.504
AMTR_s00029p00240750 Amborella trichopoda AMTR_s00029p00240750 I 0.504
POPTR_0010s19720 Populus trichocarpa POPTR_0010s19720 I 0.504
mgf014518m Mimulus guttatus mgf014518m I 0.502
mgf016608m Mimulus guttatus mgf016608m I 0.501
mgf006113m Mimulus guttatus mgf006113m I 0.501
mgf008076m Mimulus guttatus mgf008076m I 0.501
Lus10040192.g Linum usitatissimum Lus10040192.g I 0.500
BRADI4G37247 Brachypodium distachyon BRADI4G37247 I 0.500
29600.m000548 Ricinus communis 29600.m000548 I 0.500
GRMZM2G066528 Zea mays GRMZM2G066528 I 0.500
SapurV1A.0825s0160 Salix purpurea SapurV1A.0825s0160 I 0.498
POPTR_0008s06730 Populus trichocarpa POPTR_0008s06730 I 0.498
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.497
Ca_09896 Cicer arietinum Ca_09896 I 0.496
Pm026798 Prunus mume Pm026798 I 0.496
TCM_042534 Theobroma cacao TCM_042534 I 0.491
Traes_5DL_DD9491112 Triticum aestivum Traes_5DL_DD9491112 I 0.490
Traes_5BL_9CC98DD38 Triticum aestivum Traes_5BL_9CC98DD38 I 0.490
Aquca_015_00344 Aquilegia coerulea Aquca_015_00344 I 0.490
evm.TU.supercontig_19.183 Carica papaya evm.TU.supercontig_19.183 I 0.488
MTR_8g073345 Medicago truncatula MTR_8g073345 I 0.487
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.487
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.487
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.487
Eucgr.J02535 Eucalyptus grandis Eucgr.J02535 I 0.486
SELMODRAFT_175895 Selaginella moellendorffii SELMODRAFT_175895 I 0.486
SELMODRAFT_38818 Selaginella moellendorffii SELMODRAFT_38818 I 0.486
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.484
OMERI09G14100 Oryza meridionalis OMERI09G14100 I 0.478
ONIVA09G20030 Oryza nivara ONIVA09G20030 I 0.478
ORUFI09G20440 Oryza rufipogon ORUFI09G20440 I 0.478
ORGLA09G0150800 Oryza glaberrima ORGLA09G0150800 I 0.478
OS09G0551600 Oryza sativa OS09G0551600 I 0.478
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.477
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.477
MTR_7g082820 Medicago truncatula MTR_7g082820 I 0.476
29669.m000844 Ricinus communis 29669.m000844 I 0.475
OB09G25530 Oryza brachyantha OB09G25530 I 0.472
LPERR09G14820 Leersia perrieri LPERR09G14820 I 0.472
TRIUR3_27273 Triticum urartu TRIUR3_27273 I 0.472
GSMUA_Achr4G25860_001 Musa acuminata GSMUA_Achr4G25860_001 I 0.471
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.470
AMTR_s00109p00094550 Amborella trichopoda AMTR_s00109p00094550 I 0.465
BOTBODRAFT_30512 Botryobasidium botryosum BOTBODRAFT_30512 N 0.462
PDK_20s1434871g001 Phoenix dactylifera PDK_20s1434871g001 I 0.460
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.455
EHI_179340 Entamoeba histolytica EHI_179340 N 0.450
EDI_110640 Entamoeba dispar EDI_110640 N 0.450
cassava17389.m1 Manihot esculenta cassava17389.m1 I 0.450
PK14705.1 Cannabis sativa PK14705.1 I 0.444
SPPG_05251 Spizellomyces punctatus SPPG_05251 I 0.442
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.442
GSMUA_Achr2G11060_001 Musa acuminata GSMUA_Achr2G11060_001 I 0.436
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.436
OB01G34910 Oryza brachyantha OB01G34910 I 0.435
F775_30706 Aegilops tauschii F775_30706 I 0.433
Traes_6AL_9EC9874F1 Triticum aestivum Traes_6AL_9EC9874F1 I 0.433
Traes_6BL_017F7FCF8 Triticum aestivum Traes_6BL_017F7FCF8 I 0.433
TRIUR3_34670 Triticum urartu TRIUR3_34670 I 0.433
Traes_6DL_E5B5F44FC Triticum aestivum Traes_6DL_E5B5F44FC I 0.433
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.432
SELMODRAFT_18312 Selaginella moellendorffii SELMODRAFT_18312 I 0.430
SELMODRAFT_18313 Selaginella moellendorffii SELMODRAFT_18313 I 0.430
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.428
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.428
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.428
mgf000913m Mimulus guttatus mgf000913m I 0.426
estExt_fgenesh1_pm.C_130068 Coccomyxa subellipsoidea C169 estExt_fgenesh1_pm.C_130068 I 0.425
estExt_Genewise1.C_130158 Chlorella vulgaris estExt_Genewise1.C_130158 I 0.425
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.424
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.424
OBART01G25720 Oryza barthii OBART01G25720 N 0.424
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.424
OS01G0666200 Oryza sativa OS01G0666200 N 0.424
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.424
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.424
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.424
cassava42041.valid.m1 Manihot esculenta cassava42041.valid.m1 I 0.417
29822.m003476 Ricinus communis 29822.m003476 I 0.417
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.417
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.416
EuGene.1300010342 Micromonas sp RCC299 EuGene.1300010342 I 0.415