Cucsa.047620 (Cucumis sativus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cucsa.047620 T333948_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Cucsa.047620.1 Sox 74 143
Cucsa.047620.2 Sox 74 106

Links

Other Sox family TFs
Other Cucumis sativus TFs

72 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.666
Ca_05162 Cicer arietinum Ca_05162 N 0.661
Ca_05164 Cicer arietinum Ca_05164 N 0.661
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.657
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.657
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.657
29693.m002035 Ricinus communis 29693.m002035 N 0.656
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.656
MDP0000143506 Malus domestica MDP0000143506 N 0.653
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.652
MDP0000695104 Malus domestica MDP0000695104 N 0.651
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.651
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.648
TCM_029514 Theobroma cacao TCM_029514 N 0.647
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.647
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.647
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.647
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.646
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.638
F775_05073 Aegilops tauschii F775_05073 I 0.638
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.638
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.636
Bo4g182600 Brassica oleracea Bo4g182600 N 0.630
Bra021911 Brassica rapa Bra021911 N 0.630
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.630
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.627
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.623
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.623
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.621
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.616
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.609
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.603
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.598
PK22924.1 Cannabis sativa PK22924.1 N 0.597
mgf009922m Mimulus guttatus mgf009922m N 0.597
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.596
Si003021m.g Setaria italica Si003021m.g N 0.596
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.588
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.588
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.586
MDP0000392251 Malus domestica MDP0000392251 N 0.585
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.570
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.569
Gorai.012G047000 Gossypium raimondii Gorai.012G047000 N 0.566
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.563
GLYMA01G28253 Glycine max GLYMA01G28253 N 0.552
OB01G34910 Oryza brachyantha OB01G34910 I 0.537
MDP0000170945 Malus domestica MDP0000170945 N 0.528
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.520
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.505
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.505
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.505
OBART01G25720 Oryza barthii OBART01G25720 N 0.505
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.505
OS01G0666200 Oryza sativa OS01G0666200 N 0.505
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.505
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.503
BGLB013489 Biomphalaria glabrata BGLB013489 N 0.478
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.471
GRMZM2G144398 Zea mays GRMZM2G144398 N 0.470
RSKR_0000394100 Rhabditophanes kr3021 RSKR_0000394100 N 0.464
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.446
Traes_6DL_F46673879 Triticum aestivum Traes_6DL_F46673879 N 0.446
XM_002306945.1 Populus trichocarpa POPTR_0005s27390 I 0.440
estExt_Genewise1.C_10428 Volvox carteri estExt_Genewise1.C_10428 N 0.437
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.433
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.433
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.432
Ca_05351 Cicer arietinum Ca_05351 I 0.432
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.432
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.432
gene18862-v1.0-hybrid Fragaria vesca gene18862-v1.0-hybrid I 0.416