CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Cucsa.047620
(
Cucumis sativus
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Cucsa.047620
T333948_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cucsa.047620.1
Sox
74
143
PKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVGKACGEKWKTMTYEEKVQYYDIATEKRAEFDKAMTEYK
Cucsa.047620.2
Sox
74
106
PKKPPTAFFYFLDDFRKEFQEQNPDVKTMRDVS
Links
Other
Sox
family TFs
Other
Cucumis sativus
TFs
72 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
SapurV1A.0560s0060
Salix purpurea
SapurV1A.0560s0060
N
0.666
Ca_05162
Cicer arietinum
Ca_05162
N
0.661
Ca_05164
Cicer arietinum
Ca_05164
N
0.661
Cagra.7352s0006
Capsella grandiflora
Cagra.7352s0006
N
0.657
Carubv10024236m.g
Capsella rubella
Carubv10024236m.g
N
0.657
Bostr.23794s0665
Boechera stricta
Bostr.23794s0665
N
0.657
29693.m002035
Ricinus communis
29693.m002035
N
0.656
POPTR_0004s13630
Populus trichocarpa
POPTR_0004s13630
N
0.656
MDP0000143506
Malus domestica
MDP0000143506
N
0.653
gene30574-v1.0-hybrid
Fragaria vesca
gene30574-v1.0-hybrid
N
0.652
MDP0000695104
Malus domestica
MDP0000695104
N
0.651
Eucgr.D00306
Eucalyptus grandis
Eucgr.D00306
N
0.651
PRUPE_ppa013152mg
Prunus persica
PRUPE_ppa013152mg
N
0.648
TCM_029514
Theobroma cacao
TCM_029514
N
0.647
Ciclev10017037m.g
Citrus clementina
Ciclev10017037m.g
N
0.647
orange1.1g031573m.g
Citrus sinensis
orange1.1g031573m.g
N
0.647
Gorai.011G042300
Gossypium raimondii
Gorai.011G042300
N
0.647
MTR_4g094622
Medicago truncatula
MTR_4g094622
N
0.646
TRAES3BF031900060CFD_g
Triticum aestivum
TRAES3BF031900060CFD_g
I
0.638
F775_05073
Aegilops tauschii
F775_05073
I
0.638
AMTR_s00014p00061870
Amborella trichopoda
AMTR_s00014p00061870
N
0.638
cassava7606.valid.m1
Manihot esculenta
cassava7606.valid.m1
N
0.636
Bo4g182600
Brassica oleracea
Bo4g182600
N
0.630
Bra021911
Brassica rapa
Bra021911
N
0.630
AT2G34450
Arabidopsis thaliana
AT2G34450
N
0.630
MLOC_7069
Hordeum vulgare
MLOC_7069
N
0.627
GLYMA08G08840
Glycine max
GLYMA08G08840
N
0.623
GLYMA05G25900
Glycine max
GLYMA05G25900
N
0.623
Pavir.J05892
Panicum virgatum
Pavir.J05892
N
0.621
cassava6449.valid.m1
Manihot esculenta
cassava6449.valid.m1
N
0.616
Lus10025391.g
Linum usitatissimum
Lus10025391.g
N
0.609
Thhalv10017360m.g
Eutrema salsugineum
Thhalv10017360m.g
N
0.603
GSMUA_Achr4G07950_001
Musa acuminata
GSMUA_Achr4G07950_001
N
0.598
PK22924.1
Cannabis sativa
PK22924.1
N
0.597
mgf009922m
Mimulus guttatus
mgf009922m
N
0.597
Lus10015268.g
Linum usitatissimum
Lus10015268.g
N
0.596
Si003021m.g
Setaria italica
Si003021m.g
N
0.596
GSMUA_Achr4G15000_001
Musa acuminata
GSMUA_Achr4G15000_001
N
0.588
BRADI2G45927
Brachypodium distachyon
BRADI2G45927
I
0.588
Aquca_022_00160
Aquilegia coerulea
Aquca_022_00160
N
0.586
MDP0000392251
Malus domestica
MDP0000392251
N
0.585
GRMZM2G024247
Zea mays
GRMZM2G024247
N
0.570
fgenesh2_kg.4__1466__AT2G34450.2
Arabidopsis lyrata
fgenesh2_kg.4__1466__AT2G34450.2
N
0.569
Gorai.012G047000
Gossypium raimondii
Gorai.012G047000
N
0.566
Sb03g030540
Sorghum bicolor
Sb03g030540
N
0.563
GLYMA01G28253
Glycine max
GLYMA01G28253
N
0.552
OB01G34910
Oryza brachyantha
OB01G34910
I
0.537
MDP0000170945
Malus domestica
MDP0000170945
N
0.528
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
0.520
BGIOSGA004165
Oryza indica
BGIOSGA004165
N
0.505
ORGLA01G0210300
Oryza glaberrima
ORGLA01G0210300
N
0.505
OMERI01G23390
Oryza meridionalis
OMERI01G23390
N
0.505
OBART01G25720
Oryza barthii
OBART01G25720
N
0.505
OGLUM01G29550
Oryza glumaepatula
OGLUM01G29550
N
0.505
OS01G0666200
Oryza sativa
OS01G0666200
N
0.505
ORUFI01G28620
Oryza rufipogon
ORUFI01G28620
N
0.505
BGIOSGA004167
Oryza indica
BGIOSGA004167
N
0.503
BGLB013489
Biomphalaria glabrata
BGLB013489
N
0.478
LPERR01G21970
Leersia perrieri
LPERR01G21970
N
0.471
GRMZM2G144398
Zea mays
GRMZM2G144398
N
0.470
RSKR_0000394100
Rhabditophanes kr3021
RSKR_0000394100
N
0.464
orange1.1g029982m.g
Citrus sinensis
orange1.1g029982m.g
I
0.446
Traes_6DL_F46673879
Triticum aestivum
Traes_6DL_F46673879
N
0.446
XM_002306945.1
Populus trichocarpa
POPTR_0005s27390
I
0.440
estExt_Genewise1.C_10428
Volvox carteri
estExt_Genewise1.C_10428
N
0.437
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
0.433
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
0.433
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.432
Ca_05351
Cicer arietinum
Ca_05351
I
0.432
GLYMA10G43440
Glycine max
GLYMA10G43440
I
0.432
GLYMA20G23370
Glycine max
GLYMA20G23370
I
0.432
gene18862-v1.0-hybrid
Fragaria vesca
gene18862-v1.0-hybrid
I
0.416