TRAES3BF031900060CFD_g (Triticum aestivum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 TRAES3BF031900060CFD_g T332985_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.416 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
TRAES3BF031900060CFD_t1 Sox 49 118

Links

Other Sox family TFs
Other Triticum aestivum TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_05073 Aegilops tauschii F775_05073 I 0.741
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.731
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.691
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.672
MDP0000143506 Malus domestica MDP0000143506 N 0.656
29693.m002035 Ricinus communis 29693.m002035 N 0.653
Si003021m.g Setaria italica Si003021m.g N 0.647
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.646
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.645
TCM_029514 Theobroma cacao TCM_029514 N 0.645
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.645
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.645
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.641
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.641
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.639
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.638
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.636
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.636
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.636
MDP0000695104 Malus domestica MDP0000695104 N 0.636
OB01G34910 Oryza brachyantha OB01G34910 I 0.634
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.629
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.626
Ca_05164 Cicer arietinum Ca_05164 N 0.624
Ca_05162 Cicer arietinum Ca_05162 N 0.624
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.614
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.614
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.609
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.608
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.608
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.606
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.606
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.606
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.605
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.602
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.595
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.595
mgf009922m Mimulus guttatus mgf009922m N 0.588
Bra021911 Brassica rapa Bra021911 N 0.581
Bo4g182600 Brassica oleracea Bo4g182600 N 0.581
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.581
PK22924.1 Cannabis sativa PK22924.1 N 0.581
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.574
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.571
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.555
OS01G0666200 Oryza sativa OS01G0666200 N 0.537
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.537
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.537
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.537
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.537
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.537
OBART01G25720 Oryza barthii OBART01G25720 N 0.537
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.534
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.530
MDP0000170945 Malus domestica MDP0000170945 N 0.506
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.505
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.486
MDP0000392251 Malus domestica MDP0000392251 N 0.468
Ca_05351 Cicer arietinum Ca_05351 I 0.458
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.457
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.457
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.430
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.427
HMGB5 Arabidopsis thaliana AT4G35570 I 0.426
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.425
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.425
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.425
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.425
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.420
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.417
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.416
HMG-1 Pisum sativum Q41026_PEA D 0.416
TCM_042534 Theobroma cacao TCM_042534 I 0.416
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.416
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.416
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.416
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.416
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.416
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.416
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.416
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.364