CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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TCM_029514
(
Theobroma cacao
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00505 (HMG_box)
IPR000910
TCM_029514
T332832_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
EOY27738
Sox
80
149
PKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYEEKVKYYDIATEKRAEFDRAMADYI
EOY27739
Sox
80
125
PKKPPTAFFYFLEDFRKEFQEQNPDIKSMRDIGRACGEKWKTMTYE
Links
Other
Sox
family TFs
Other
Theobroma cacao
TFs
76 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.011G042300
Gossypium raimondii
Gorai.011G042300
N
0.741
orange1.1g031573m.g
Citrus sinensis
orange1.1g031573m.g
N
0.741
Ciclev10017037m.g
Citrus clementina
Ciclev10017037m.g
N
0.741
29693.m002035
Ricinus communis
29693.m002035
N
0.733
MDP0000392251
Malus domestica
MDP0000392251
N
0.732
SapurV1A.0560s0060
Salix purpurea
SapurV1A.0560s0060
N
0.695
cassava6449.valid.m1
Manihot esculenta
cassava6449.valid.m1
N
0.694
POPTR_0004s13630
Populus trichocarpa
POPTR_0004s13630
N
0.686
MDP0000143506
Malus domestica
MDP0000143506
N
0.684
Eucgr.D00306
Eucalyptus grandis
Eucgr.D00306
N
0.683
MDP0000695104
Malus domestica
MDP0000695104
N
0.683
PRUPE_ppa013152mg
Prunus persica
PRUPE_ppa013152mg
N
0.680
cassava7606.valid.m1
Manihot esculenta
cassava7606.valid.m1
N
0.676
AMTR_s00014p00061870
Amborella trichopoda
AMTR_s00014p00061870
N
0.676
MDP0000170945
Malus domestica
MDP0000170945
N
0.675
gene30574-v1.0-hybrid
Fragaria vesca
gene30574-v1.0-hybrid
N
0.673
PK22924.1
Cannabis sativa
PK22924.1
N
0.670
GSMUA_Achr4G07950_001
Musa acuminata
GSMUA_Achr4G07950_001
N
0.670
Carubv10024236m.g
Capsella rubella
Carubv10024236m.g
N
0.663
Cagra.7352s0006
Capsella grandiflora
Cagra.7352s0006
N
0.663
Bostr.23794s0665
Boechera stricta
Bostr.23794s0665
N
0.663
GLYMA08G08840
Glycine max
GLYMA08G08840
N
0.662
GLYMA05G25900
Glycine max
GLYMA05G25900
N
0.662
GSMUA_Achr4G15000_001
Musa acuminata
GSMUA_Achr4G15000_001
N
0.659
GRMZM2G024247
Zea mays
GRMZM2G024247
N
0.656
Ca_05164
Cicer arietinum
Ca_05164
N
0.654
Ca_05162
Cicer arietinum
Ca_05162
N
0.654
Cucsa.047620
Cucumis sativus
Cucsa.047620
N
0.647
F775_05073
Aegilops tauschii
F775_05073
I
0.645
TRAES3BF031900060CFD_g
Triticum aestivum
TRAES3BF031900060CFD_g
I
0.645
mgf009922m
Mimulus guttatus
mgf009922m
N
0.639
MTR_4g094622
Medicago truncatula
MTR_4g094622
N
0.639
Pavir.J05892
Panicum virgatum
Pavir.J05892
N
0.638
Bo4g182600
Brassica oleracea
Bo4g182600
N
0.635
AT2G34450
Arabidopsis thaliana
AT2G34450
N
0.635
Bra021911
Brassica rapa
Bra021911
N
0.635
MLOC_7069
Hordeum vulgare
MLOC_7069
N
0.634
BRADI2G45927
Brachypodium distachyon
BRADI2G45927
I
0.632
Lus10025391.g
Linum usitatissimum
Lus10025391.g
N
0.630
Lus10015268.g
Linum usitatissimum
Lus10015268.g
N
0.617
Si003021m.g
Setaria italica
Si003021m.g
N
0.612
Thhalv10017360m.g
Eutrema salsugineum
Thhalv10017360m.g
N
0.609
Aquca_022_00160
Aquilegia coerulea
Aquca_022_00160
N
0.592
Sb03g030540
Sorghum bicolor
Sb03g030540
N
0.580
fgenesh2_kg.4__1466__AT2G34450.2
Arabidopsis lyrata
fgenesh2_kg.4__1466__AT2G34450.2
N
0.574
OB01G34910
Oryza brachyantha
OB01G34910
I
0.544
Gorai.012G047000
Gossypium raimondii
Gorai.012G047000
N
0.543
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
0.537
OGLUM01G29550
Oryza glumaepatula
OGLUM01G29550
N
0.512
OBART01G25720
Oryza barthii
OBART01G25720
N
0.512
BGIOSGA004165
Oryza indica
BGIOSGA004165
N
0.512
OS01G0666200
Oryza sativa
OS01G0666200
N
0.512
OMERI01G23390
Oryza meridionalis
OMERI01G23390
N
0.512
ORGLA01G0210300
Oryza glaberrima
ORGLA01G0210300
N
0.512
ORUFI01G28620
Oryza rufipogon
ORUFI01G28620
N
0.512
BGIOSGA004167
Oryza indica
BGIOSGA004167
N
0.509
MTR_8g018100
Medicago truncatula
MTR_8g018100
N
0.489
cassava6450.valid.m1
Manihot esculenta
cassava6450.valid.m1
N
0.488
LPERR01G21970
Leersia perrieri
LPERR01G21970
N
0.478
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.464
Si007288m.g
Setaria italica
Si007288m.g
I
0.464
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.464
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.460
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.457
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.457
HelroG187893
Helobdella robusta
HelroG187893
N
0.440
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.432
GLYMA05G25892
Glycine max
GLYMA05G25892
N
0.432
fgenesh2_pg.C_Chr_03000283
Micromonas sp RCC299
fgenesh2_pg.C_Chr_03000283
N
0.419
TCM_042534
Theobroma cacao
TCM_042534
I
0.417
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
0.417
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
0.415
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
0.415
orange1.1g031906m.g
Citrus sinensis
orange1.1g031906m.g
I
0.415
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.415