Thhalv10017360m.g (Eutrema salsugineum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Thhalv10017360m.g T334736_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10017360m Sox 68 138

Links

Other Sox family TFs
Other Eutrema salsugineum TFs

56 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.707
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.707
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.673
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.673
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.673
Bra021911 Brassica rapa Bra021911 N 0.646
Bo4g182600 Brassica oleracea Bo4g182600 N 0.646
Ca_05162 Cicer arietinum Ca_05162 N 0.631
Ca_05164 Cicer arietinum Ca_05164 N 0.631
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.614
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.609
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.609
TCM_029514 Theobroma cacao TCM_029514 N 0.609
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.609
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.605
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.603
29693.m002035 Ricinus communis 29693.m002035 N 0.600
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.598
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.597
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.595
MDP0000695104 Malus domestica MDP0000695104 N 0.594
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.590
MDP0000143506 Malus domestica MDP0000143506 N 0.585
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.580
Si003021m.g Setaria italica Si003021m.g N 0.572
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.568
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.566
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.563
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.563
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.561
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.556
F775_05073 Aegilops tauschii F775_05073 I 0.555
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.555
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.548
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.547
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.546
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.543
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.543
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.543
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.539
PK22924.1 Cannabis sativa PK22924.1 N 0.537
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.537
mgf009922m Mimulus guttatus mgf009922m N 0.528
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.515
MDP0000170945 Malus domestica MDP0000170945 N 0.458
OB01G34910 Oryza brachyantha OB01G34910 I 0.454
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.444
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.444
OS01G0666200 Oryza sativa OS01G0666200 N 0.444
OBART01G25720 Oryza barthii OBART01G25720 N 0.444
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.444
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.444
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.444
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.442
gw1.32.10.1 Bigelowiella natans gw1.32.10.1 N 0.426
MDP0000392251 Malus domestica MDP0000392251 N 0.420