F775_05073 (Aegilops tauschii)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 F775_05073 T329486_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.416 0.536
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EMT24204 Sox 47 116

Links

Other Sox family TFs
Other Aegilops tauschii TFs

81 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.741
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.731
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.691
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.672
MDP0000143506 Malus domestica MDP0000143506 N 0.656
29693.m002035 Ricinus communis 29693.m002035 N 0.653
Si003021m.g Setaria italica Si003021m.g N 0.647
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.646
TCM_029514 Theobroma cacao TCM_029514 N 0.645
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.645
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.645
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.645
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.641
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.641
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.639
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.638
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.636
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.636
MDP0000695104 Malus domestica MDP0000695104 N 0.636
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.636
OB01G34910 Oryza brachyantha OB01G34910 I 0.634
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.629
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.626
Ca_05164 Cicer arietinum Ca_05164 N 0.624
Ca_05162 Cicer arietinum Ca_05162 N 0.624
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.614
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.614
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.609
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.608
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.608
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.606
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.606
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.606
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.605
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.602
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.595
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.595
mgf009922m Mimulus guttatus mgf009922m N 0.588
Bra021911 Brassica rapa Bra021911 N 0.581
PK22924.1 Cannabis sativa PK22924.1 N 0.581
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.581
Bo4g182600 Brassica oleracea Bo4g182600 N 0.581
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.574
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.571
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.555
OS01G0666200 Oryza sativa OS01G0666200 N 0.537
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.537
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.537
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.537
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.537
OBART01G25720 Oryza barthii OBART01G25720 N 0.537
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.537
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.534
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.530
MDP0000170945 Malus domestica MDP0000170945 N 0.506
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.505
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.486
MDP0000392251 Malus domestica MDP0000392251 N 0.468
Ca_05351 Cicer arietinum Ca_05351 I 0.458
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.457
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.457
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.430
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.427
HMGB5 Arabidopsis thaliana AT4G35570 I 0.426
Cagra.2350s0098 Capsella grandiflora Cagra.2350s0098 I 0.425
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.425
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.425
Carubv10005973m.g Capsella rubella Carubv10005973m.g I 0.425
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.420
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.417
HMG-1 Pisum sativum Q41026_PEA D 0.416
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.416
TCM_042534 Theobroma cacao TCM_042534 I 0.416
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.416
Cagra.1891s0017 Capsella grandiflora Cagra.1891s0017 I 0.416
HMGB4 Arabidopsis lyrata fgenesh2_kg.3__3350__AT2G17560.1 I 0.416
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.416
Bostr.18351s0219 Boechera stricta Bostr.18351s0219 I 0.416
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.416
Carubv10014808m.g Capsella rubella Carubv10014808m.g I 0.416
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.364