GRMZM2G024247 (Zea mays)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GRMZM2G024247 T330319_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GRMZM2G024247_P01 Sox 41 110
GRMZM2G024247_P02 Sox 41 87

Links

Other Sox family TFs
Other Zea mays TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.735
Si003021m.g Setaria italica Si003021m.g N 0.702
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.677
TCM_029514 Theobroma cacao TCM_029514 N 0.656
MDP0000392251 Malus domestica MDP0000392251 N 0.651
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.646
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.630
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.618
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.618
Ca_05164 Cicer arietinum Ca_05164 N 0.615
Ca_05162 Cicer arietinum Ca_05162 N 0.615
F775_05073 Aegilops tauschii F775_05073 I 0.608
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.608
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.599
29693.m002035 Ricinus communis 29693.m002035 N 0.595
MDP0000170945 Malus domestica MDP0000170945 N 0.595
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.593
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.591
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.591
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.591
MDP0000695104 Malus domestica MDP0000695104 N 0.589
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.587
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.587
MDP0000143506 Malus domestica MDP0000143506 N 0.585
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.583
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.583
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.576
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.575
Bra021911 Brassica rapa Bra021911 N 0.572
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.572
Bo4g182600 Brassica oleracea Bo4g182600 N 0.572
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.570
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.568
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.558
OB01G34910 Oryza brachyantha OB01G34910 I 0.558
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.556
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.554
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.551
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.546
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.542
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.541
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.538
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.530
PK22924.1 Cannabis sativa PK22924.1 N 0.523
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.521
mgf009922m Mimulus guttatus mgf009922m N 0.514
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.514
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.514
OBART01G25720 Oryza barthii OBART01G25720 N 0.514
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.514
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.514
OS01G0666200 Oryza sativa OS01G0666200 N 0.514
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.514
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.513
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.511
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.509
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.477
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.471
Gorai.012G047000 Gossypium raimondii Gorai.012G047000 N 0.468
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.456
TCM_042534 Theobroma cacao TCM_042534 I 0.455
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.451
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.449
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.448
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.448
Si007288m.g Setaria italica Si007288m.g I 0.444
fgenesh2_pg.C_Chr_03000283 Micromonas sp RCC299 fgenesh2_pg.C_Chr_03000283 N 0.442
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.440
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.440
PRUPE_ppa011596mg Prunus persica PRUPE_ppa011596mg I 0.438
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.437
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.437
Pavir.Ba01379 Panicum virgatum Pavir.Ba01379 I 0.435
HelroG187893 Helobdella robusta HelroG187893 N 0.433
SapurV1A.0491s0160 Salix purpurea SapurV1A.0491s0160 N 0.430
Ca_05351 Cicer arietinum Ca_05351 I 0.429
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.429
orange1.1g029982m.g Citrus sinensis orange1.1g029982m.g I 0.422
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.422
M404DRAFT_998370 Pisolithus tinctorius M404DRAFT_998370 N 0.421
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
SapurV1A.2780s0020 Salix purpurea SapurV1A.2780s0020 I 0.421
Traes_1DL_ED7FDC748 Triticum aestivum Traes_1DL_ED7FDC748 N 0.420