MDP0000170945 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000170945 T334595_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000170945 Sox 127 185

Links

Other Sox family TFs
Other Malus domestica TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000392251 Malus domestica MDP0000392251 N 0.685
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.675
TCM_029514 Theobroma cacao TCM_029514 N 0.675
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.595
MDP0000143506 Malus domestica MDP0000143506 N 0.545
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.543
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.536
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.536
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.530
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.530
29693.m002035 Ricinus communis 29693.m002035 N 0.530
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.528
Ca_05164 Cicer arietinum Ca_05164 N 0.525
MDP0000695104 Malus domestica MDP0000695104 N 0.525
Ca_05162 Cicer arietinum Ca_05162 N 0.525
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.525
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.519
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.519
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.519
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.519
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.514
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.511
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.511
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.511
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.510
PK22924.1 Cannabis sativa PK22924.1 N 0.506
F775_05073 Aegilops tauschii F775_05073 I 0.506
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.506
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.500
mgf009922m Mimulus guttatus mgf009922m N 0.500
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.495
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.493
Si003021m.g Setaria italica Si003021m.g N 0.488
Bo4g182600 Brassica oleracea Bo4g182600 N 0.485
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.485
Bra021911 Brassica rapa Bra021911 N 0.485
Gorai.012G047000 Gossypium raimondii Gorai.012G047000 N 0.484
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.481
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.479
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.469
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.461
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.461
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.458
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.456
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.442
OB01G34910 Oryza brachyantha OB01G34910 I 0.436
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.432
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.425
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.425
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.425
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.425
OBART01G25720 Oryza barthii OBART01G25720 N 0.425
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.425
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.425
OS01G0666200 Oryza sativa OS01G0666200 N 0.425
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.424
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.422
DDB_G0279661 Dictyostelium discoideum DDB_G0279661 N 0.418