CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
Gorai.011G042300
(
Gossypium raimondii
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
Gorai.011G042300
T334552_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.011G042300.1
Sox
79
148
PKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYI
Gorai.011G042300.2
Sox
79
148
PKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYI
Gorai.011G042300.3
Sox
48
117
PKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYI
Gorai.011G042300.4
Sox
30
88
QEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEEKVKYYDIATGKRAEFDRAMAEYI
Gorai.011G042300.5
Sox
79
127
PKKPPTAFFYFLEDFRKDFQEQNPDIKSMRDIGKACGEKWKTMTYEVCA
Links
Other
Sox
family TFs
Other
Gossypium raimondii
TFs
90 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
orange1.1g031573m.g
Citrus sinensis
orange1.1g031573m.g
N
0.741
Ciclev10017037m.g
Citrus clementina
Ciclev10017037m.g
N
0.741
TCM_029514
Theobroma cacao
TCM_029514
N
0.741
29693.m002035
Ricinus communis
29693.m002035
N
0.733
SapurV1A.0560s0060
Salix purpurea
SapurV1A.0560s0060
N
0.695
cassava6449.valid.m1
Manihot esculenta
cassava6449.valid.m1
N
0.694
MDP0000392251
Malus domestica
MDP0000392251
N
0.694
POPTR_0004s13630
Populus trichocarpa
POPTR_0004s13630
N
0.686
MDP0000143506
Malus domestica
MDP0000143506
N
0.684
MDP0000695104
Malus domestica
MDP0000695104
N
0.683
Eucgr.D00306
Eucalyptus grandis
Eucgr.D00306
N
0.683
PRUPE_ppa013152mg
Prunus persica
PRUPE_ppa013152mg
N
0.680
cassava6450.valid.m1
Manihot esculenta
cassava6450.valid.m1
N
0.677
cassava7606.valid.m1
Manihot esculenta
cassava7606.valid.m1
N
0.676
AMTR_s00014p00061870
Amborella trichopoda
AMTR_s00014p00061870
N
0.676
MDP0000170945
Malus domestica
MDP0000170945
N
0.675
gene30574-v1.0-hybrid
Fragaria vesca
gene30574-v1.0-hybrid
N
0.673
GSMUA_Achr4G07950_001
Musa acuminata
GSMUA_Achr4G07950_001
N
0.670
PK22924.1
Cannabis sativa
PK22924.1
N
0.670
Carubv10024236m.g
Capsella rubella
Carubv10024236m.g
N
0.663
Bostr.23794s0665
Boechera stricta
Bostr.23794s0665
N
0.663
Cagra.7352s0006
Capsella grandiflora
Cagra.7352s0006
N
0.663
GLYMA05G25900
Glycine max
GLYMA05G25900
N
0.662
GLYMA08G08840
Glycine max
GLYMA08G08840
N
0.662
GSMUA_Achr4G15000_001
Musa acuminata
GSMUA_Achr4G15000_001
N
0.659
Ca_05164
Cicer arietinum
Ca_05164
N
0.654
Ca_05162
Cicer arietinum
Ca_05162
N
0.654
Cucsa.047620
Cucumis sativus
Cucsa.047620
N
0.647
F775_05073
Aegilops tauschii
F775_05073
I
0.645
TRAES3BF031900060CFD_g
Triticum aestivum
TRAES3BF031900060CFD_g
I
0.645
Traes_3DL_21C50DDF5
Triticum aestivum
Traes_3DL_21C50DDF5
N
0.645
MTR_4g094622
Medicago truncatula
MTR_4g094622
N
0.639
mgf009922m
Mimulus guttatus
mgf009922m
N
0.639
Pavir.J05892
Panicum virgatum
Pavir.J05892
N
0.638
AT2G34450
Arabidopsis thaliana
AT2G34450
N
0.635
Bo4g182600
Brassica oleracea
Bo4g182600
N
0.635
Bra021911
Brassica rapa
Bra021911
N
0.635
MLOC_7069
Hordeum vulgare
MLOC_7069
N
0.634
BRADI2G45927
Brachypodium distachyon
BRADI2G45927
I
0.632
Lus10025391.g
Linum usitatissimum
Lus10025391.g
N
0.630
GRMZM2G024247
Zea mays
GRMZM2G024247
N
0.618
Lus10015268.g
Linum usitatissimum
Lus10015268.g
N
0.617
Si003021m.g
Setaria italica
Si003021m.g
N
0.612
Thhalv10017360m.g
Eutrema salsugineum
Thhalv10017360m.g
N
0.609
Aquca_022_00160
Aquilegia coerulea
Aquca_022_00160
N
0.592
Sb03g030540
Sorghum bicolor
Sb03g030540
N
0.580
fgenesh2_kg.4__1466__AT2G34450.2
Arabidopsis lyrata
fgenesh2_kg.4__1466__AT2G34450.2
N
0.574
OB01G34910
Oryza brachyantha
OB01G34910
I
0.544
Pavir.Eb02691
Panicum virgatum
Pavir.Eb02691
I
0.537
OMERI01G23390
Oryza meridionalis
OMERI01G23390
N
0.512
OBART01G25720
Oryza barthii
OBART01G25720
N
0.512
BGIOSGA004165
Oryza indica
BGIOSGA004165
N
0.512
ORGLA01G0210300
Oryza glaberrima
ORGLA01G0210300
N
0.512
OGLUM01G29550
Oryza glumaepatula
OGLUM01G29550
N
0.512
ORUFI01G28620
Oryza rufipogon
ORUFI01G28620
N
0.512
OS01G0666200
Oryza sativa
OS01G0666200
N
0.512
BGIOSGA004167
Oryza indica
BGIOSGA004167
N
0.509
TRIUR3_17277
Triticum urartu
TRIUR3_17277
N
0.507
Gorai.012G047000
Gossypium raimondii
Gorai.012G047000
N
0.505
PDK_20s1781681g001
Phoenix dactylifera
PDK_20s1781681g001
N
0.479
LPERR01G21970
Leersia perrieri
LPERR01G21970
N
0.478
Traes_7BL_F45C15FA2
Triticum aestivum
Traes_7BL_F45C15FA2
N
0.476
Traes_7AL_364A6E96F
Triticum aestivum
Traes_7AL_364A6E96F
N
0.476
Traes_7DL_0CEFCB39D
Triticum aestivum
Traes_7DL_0CEFCB39D
N
0.476
D917_01243
Trichinella nativa
D917_01243
N
0.461
D917_08464
Trichinella nativa
D917_08464
N
0.461
GLYMA05G25892
Glycine max
GLYMA05G25892
N
0.456
MDP0000242568
Malus domestica
MDP0000242568
I
0.452
MTR_8g018100
Medicago truncatula
MTR_8g018100
N
0.451
PredSwiss_CON4.1
Pneumocystis carinii
PredSwiss_CON4.1
N
0.440
LCUP018488
Lucilia cuprina
LCUP018488
N
0.436
chr5.CM0180.220.nd
Lotus japonicus
chr5.CM0180.220.nd
I
0.432
BGLB013830
Biomphalaria glabrata
BGLB013830
N
0.431
MLOC_68913
Hordeum vulgare
MLOC_68913
N
0.427
GLYMA03G08270
Glycine max
GLYMA03G08270
I
0.426
Si007288m.g
Setaria italica
Si007288m.g
I
0.426
GLYMA01G28820
Glycine max
GLYMA01G28820
I
0.426
MCINX003696
Melitaea cinxia
MCINX003696
N
0.424
Aquca_004_00335
Aquilegia coerulea
Aquca_004_00335
I
0.422
GLYMA08G20341
Glycine max
GLYMA08G20341
N
0.421
BRADI1G29730
Brachypodium distachyon
BRADI1G29730
I
0.420
GRMZM5G834758
Zea mays
GRMZM5G834758
I
0.420
SVUK_0000827101
Strongylus vulgaris
SVUK_0000827101
N
0.419
DILT_0001977801
Diphyllobothrium latum
DILT_0001977801
N
0.417
Gorai.013G018500
Gossypium raimondii
Gorai.013G018500
I
0.417
TCM_042534
Theobroma cacao
TCM_042534
I
0.417
Bostr.7867s1415
Boechera stricta
Bostr.7867s1415
I
0.415
SapurV1A.2780s0020
Salix purpurea
SapurV1A.2780s0020
I
0.415
HMGB5
Arabidopsis lyrata
Al_scaffold_0007_498
I
0.415