MDP0000695104 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000695104 T334624_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000695104 Sox 74 143

Links

Other Sox family TFs
Other Malus domestica TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000143506 Malus domestica MDP0000143506 N 0.721
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.697
29693.m002035 Ricinus communis 29693.m002035 N 0.691
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.684
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.683
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.683
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.683
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.683
TCM_029514 Theobroma cacao TCM_029514 N 0.683
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.658
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.658
Ca_05164 Cicer arietinum Ca_05164 N 0.652
Ca_05162 Cicer arietinum Ca_05162 N 0.652
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.652
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.651
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.649
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.649
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.649
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.640
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.637
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.636
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.636
F775_05073 Aegilops tauschii F775_05073 I 0.636
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.634
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.634
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.634
PK22924.1 Cannabis sativa PK22924.1 N 0.632
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.627
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.626
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.623
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.623
Bra021911 Brassica rapa Bra021911 N 0.621
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.621
Bo4g182600 Brassica oleracea Bo4g182600 N 0.621
Si003021m.g Setaria italica Si003021m.g N 0.614
mgf009922m Mimulus guttatus mgf009922m N 0.606
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.595
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.594
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.590
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.589
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.582
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.578
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.560
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.539
OB01G34910 Oryza brachyantha OB01G34910 I 0.535
MDP0000170945 Malus domestica MDP0000170945 N 0.525
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.514
OBART01G25720 Oryza barthii OBART01G25720 N 0.514
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.514
OS01G0666200 Oryza sativa OS01G0666200 N 0.514
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.514
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.514
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.514
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.512
MDP0000392251 Malus domestica MDP0000392251 N 0.481
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.480
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.446
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.430