29693.m002035 (Ricinus communis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 29693.m002035 T333889_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
29693.m002035 Sox 110 179

Links

Other Sox family TFs
Other Ricinus communis TFs

62 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.733
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.733
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.733
TCM_029514 Theobroma cacao TCM_029514 N 0.733
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.702
MDP0000143506 Malus domestica MDP0000143506 N 0.692
MDP0000695104 Malus domestica MDP0000695104 N 0.691
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.691
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.688
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.687
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.684
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.684
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.678
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.677
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.673
PK22924.1 Cannabis sativa PK22924.1 N 0.670
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.667
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.662
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.662
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.656
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.655
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.655
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.655
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.653
F775_05073 Aegilops tauschii F775_05073 I 0.653
Ca_05164 Cicer arietinum Ca_05164 N 0.646
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.646
Ca_05162 Cicer arietinum Ca_05162 N 0.646
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.642
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.640
mgf009922m Mimulus guttatus mgf009922m N 0.639
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.631
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.630
Bra021911 Brassica rapa Bra021911 N 0.627
Bo4g182600 Brassica oleracea Bo4g182600 N 0.627
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.627
Si003021m.g Setaria italica Si003021m.g N 0.620
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.617
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.601
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.600
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.595
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.588
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.566
OB01G34910 Oryza brachyantha OB01G34910 I 0.552
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.545
MDP0000170945 Malus domestica MDP0000170945 N 0.530
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.520
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.520
OS01G0666200 Oryza sativa OS01G0666200 N 0.520
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.520
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.520
OBART01G25720 Oryza barthii OBART01G25720 N 0.520
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.520
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.518
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.496
MDP0000392251 Malus domestica MDP0000392251 N 0.492
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.486
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.440
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.423
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.417
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.415
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.415