cassava7606.valid.m1 (Manihot esculenta)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 cassava7606.valid.m1 T333947_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
cassava7606.valid.m1 Sox 58 127

Links

Other Sox family TFs
Other Manihot esculenta TFs

65 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.704
29693.m002035 Ricinus communis 29693.m002035 N 0.684
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.676
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.676
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.676
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.676
TCM_029514 Theobroma cacao TCM_029514 N 0.676
PK22924.1 Cannabis sativa PK22924.1 N 0.672
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.667
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.663
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.660
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.657
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.647
MDP0000143506 Malus domestica MDP0000143506 N 0.642
F775_05073 Aegilops tauschii F775_05073 I 0.639
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.639
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.637
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.636
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.634
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.634
MDP0000695104 Malus domestica MDP0000695104 N 0.634
Bo4g182600 Brassica oleracea Bo4g182600 N 0.629
Bra021911 Brassica rapa Bra021911 N 0.629
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.629
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.629
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.627
mgf009922m Mimulus guttatus mgf009922m N 0.619
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.616
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.605
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.605
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.604
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.604
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.604
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.595
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.589
Ca_05164 Cicer arietinum Ca_05164 N 0.588
Ca_05162 Cicer arietinum Ca_05162 N 0.588
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.574
Si003021m.g Setaria italica Si003021m.g N 0.570
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.568
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.543
OB01G34910 Oryza brachyantha OB01G34910 I 0.539
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.538
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.538
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.500
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.500
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.500
OBART01G25720 Oryza barthii OBART01G25720 N 0.500
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.500
OS01G0666200 Oryza sativa OS01G0666200 N 0.500
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.500
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.500
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.494
MDP0000170945 Malus domestica MDP0000170945 N 0.481
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.472
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.468
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.450
MDP0000392251 Malus domestica MDP0000392251 N 0.444
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.433
GLYMA05G25892 Glycine max GLYMA05G25892 N 0.432
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.427
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.427
Ca_05351 Cicer arietinum Ca_05351 I 0.423
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.423
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.423