Si003021m.g (Setaria italica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Si003021m.g T332539_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Si003021m Sox 107 176

Links

Other Sox family TFs
Other Setaria italica TFs

70 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.716
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.709
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.702
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.685
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.657
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.655
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.647
F775_05073 Aegilops tauschii F775_05073 I 0.647
Ca_05162 Cicer arietinum Ca_05162 N 0.640
Ca_05164 Cicer arietinum Ca_05164 N 0.640
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.625
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.625
MDP0000143506 Malus domestica MDP0000143506 N 0.624
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.623
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.623
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.623
29693.m002035 Ricinus communis 29693.m002035 N 0.620
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.615
MDP0000695104 Malus domestica MDP0000695104 N 0.614
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.614
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.612
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.612
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.612
TCM_029514 Theobroma cacao TCM_029514 N 0.612
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.608
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.608
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.598
Bra021911 Brassica rapa Bra021911 N 0.598
Bo4g182600 Brassica oleracea Bo4g182600 N 0.598
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.596
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.594
OB01G34910 Oryza brachyantha OB01G34910 I 0.590
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.587
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.584
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.584
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.581
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.574
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.573
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.572
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.570
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.562
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.552
PK22924.1 Cannabis sativa PK22924.1 N 0.549
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.547
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.541
mgf009922m Mimulus guttatus mgf009922m N 0.540
OS01G0666200 Oryza sativa OS01G0666200 N 0.539
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.539
OBART01G25720 Oryza barthii OBART01G25720 N 0.539
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.539
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.539
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.539
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.539
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.537
MDP0000170945 Malus domestica MDP0000170945 N 0.488
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.455
Ca_05351 Cicer arietinum Ca_05351 I 0.455
MDP0000392251 Malus domestica MDP0000392251 N 0.450
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.444
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.440
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.440
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.428
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.428
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.426
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.422
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.421
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.421
estExt_Genewise1.C_510099 Volvox carteri estExt_Genewise1.C_510099 N 0.419
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.416