Sb03g030540 (Sorghum bicolor)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Sb03g030540 T332414_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Sb03g030540.1 Sox 25 94

Links

Other Sox family TFs
Other Sorghum bicolor TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.735
Si003021m.g Setaria italica Si003021m.g N 0.709
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.683
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.652
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.625
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.623
F775_05073 Aegilops tauschii F775_05073 I 0.614
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.614
Ca_05164 Cicer arietinum Ca_05164 N 0.608
Ca_05162 Cicer arietinum Ca_05162 N 0.608
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.593
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.593
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.591
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.591
MDP0000143506 Malus domestica MDP0000143506 N 0.591
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.591
29693.m002035 Ricinus communis 29693.m002035 N 0.588
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.582
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.582
MDP0000695104 Malus domestica MDP0000695104 N 0.582
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.580
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.580
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.580
TCM_029514 Theobroma cacao TCM_029514 N 0.580
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.576
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.576
Bra021911 Brassica rapa Bra021911 N 0.565
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.565
Bo4g182600 Brassica oleracea Bo4g182600 N 0.565
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.563
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.561
OB01G34910 Oryza brachyantha OB01G34910 I 0.558
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.554
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.552
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.551
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.549
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.542
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.541
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.539
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.538
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.530
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.520
PK22924.1 Cannabis sativa PK22924.1 N 0.517
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.514
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.509
mgf009922m Mimulus guttatus mgf009922m N 0.508
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.507
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.507
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.507
OS01G0666200 Oryza sativa OS01G0666200 N 0.507
OBART01G25720 Oryza barthii OBART01G25720 N 0.507
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.507
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.507
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.505
MDP0000170945 Malus domestica MDP0000170945 N 0.456
Aquca_007_00897 Aquilegia coerulea Aquca_007_00897 I 0.444
SELMODRAFT_117986 Selaginella moellendorffii SELMODRAFT_117986 I 0.440
SELMODRAFT_75453 Selaginella moellendorffii SELMODRAFT_75453 I 0.440
gene20961-v1.0-hybrid Fragaria vesca gene20961-v1.0-hybrid I 0.422
Ca_05351 Cicer arietinum Ca_05351 I 0.422
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.422
GRMZM2G162284 Zea mays GRMZM2G162284 I 0.421
MDP0000392251 Malus domestica MDP0000392251 N 0.418