gene30574-v1.0-hybrid (Fragaria vesca)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 gene30574-v1.0-hybrid T334522_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
mrna30574.1-v1.0-hybrid Sox 49 118

Links

Other Sox family TFs
Other Fragaria vesca TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.719
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.710
29693.m002035 Ricinus communis 29693.m002035 N 0.673
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.673
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.673
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.673
TCM_029514 Theobroma cacao TCM_029514 N 0.673
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.660
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.652
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.641
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.641
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.634
MDP0000143506 Malus domestica MDP0000143506 N 0.631
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.630
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.629
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.629
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.629
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.629
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.629
F775_05073 Aegilops tauschii F775_05073 I 0.629
MDP0000695104 Malus domestica MDP0000695104 N 0.623
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.623
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.623
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.618
mgf009922m Mimulus guttatus mgf009922m N 0.617
Ca_05162 Cicer arietinum Ca_05162 N 0.613
Ca_05164 Cicer arietinum Ca_05164 N 0.613
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.613
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.612
PK22924.1 Cannabis sativa PK22924.1 N 0.610
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.603
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.603
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.599
Bo4g182600 Brassica oleracea Bo4g182600 N 0.595
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.595
Bra021911 Brassica rapa Bra021911 N 0.595
Si003021m.g Setaria italica Si003021m.g N 0.587
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.579
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.577
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.568
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.554
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.554
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.534
OB01G34910 Oryza brachyantha OB01G34910 I 0.528
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.511
MDP0000170945 Malus domestica MDP0000170945 N 0.511
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.489
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.489
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.489
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.489
OS01G0666200 Oryza sativa OS01G0666200 N 0.489
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.489
OBART01G25720 Oryza barthii OBART01G25720 N 0.489
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.487
MDP0000392251 Malus domestica MDP0000392251 N 0.473
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.462
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.428
Bostr.7867s1415 Boechera stricta Bostr.7867s1415 I 0.427
HMGB5 Arabidopsis lyrata Al_scaffold_0007_498 I 0.427
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.417
Ca_05351 Cicer arietinum Ca_05351 I 0.417
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.417
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.417