MDP0000143506 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000143506 T334592_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000143506 Sox 127 196

Links

Other Sox family TFs
Other Malus domestica TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
MDP0000695104 Malus domestica MDP0000695104 N 0.721
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.698
29693.m002035 Ricinus communis 29693.m002035 N 0.692
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.688
TCM_029514 Theobroma cacao TCM_029514 N 0.684
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.684
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.684
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.684
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.682
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.659
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.659
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.656
F775_05073 Aegilops tauschii F775_05073 I 0.656
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.653
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.653
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.649
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.646
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.646
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.646
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.645
Ca_05162 Cicer arietinum Ca_05162 N 0.643
Ca_05164 Cicer arietinum Ca_05164 N 0.643
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.643
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.642
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.642
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.638
PK22924.1 Cannabis sativa PK22924.1 N 0.633
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.631
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.631
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.628
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.628
Si003021m.g Setaria italica Si003021m.g N 0.624
Bo4g182600 Brassica oleracea Bo4g182600 N 0.612
Bra021911 Brassica rapa Bra021911 N 0.612
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.612
mgf009922m Mimulus guttatus mgf009922m N 0.597
Aquca_022_00160 Aquilegia coerulea Aquca_022_00160 N 0.592
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.591
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.588
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.585
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.585
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.575
fgenesh2_kg.4__1466__AT2G34450.2 Arabidopsis lyrata fgenesh2_kg.4__1466__AT2G34450.2 N 0.551
OB01G34910 Oryza brachyantha OB01G34910 I 0.548
Pavir.Eb02691 Panicum virgatum Pavir.Eb02691 I 0.548
MDP0000170945 Malus domestica MDP0000170945 N 0.545
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.510
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.510
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.510
OS01G0666200 Oryza sativa OS01G0666200 N 0.510
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.510
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.510
OBART01G25720 Oryza barthii OBART01G25720 N 0.510
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.507
MDP0000392251 Malus domestica MDP0000392251 N 0.501
LPERR01G21970 Leersia perrieri LPERR01G21970 N 0.489
cassava6450.valid.m1 Manihot esculenta cassava6450.valid.m1 N 0.447
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.434
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.420