MDP0000392251 (Malus domestica)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 MDP0000392251 T334619_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000392251 Sox 49 95

Links

Other Sox family TFs
Other Malus domestica TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
TCM_029514 Theobroma cacao TCM_029514 N 0.732
Gorai.011G042300 Gossypium raimondii Gorai.011G042300 N 0.694
MDP0000170945 Malus domestica MDP0000170945 N 0.685
GRMZM2G024247 Zea mays GRMZM2G024247 N 0.651
Cucsa.047620 Cucumis sativus Cucsa.047620 N 0.585
Gorai.012G047000 Gossypium raimondii Gorai.012G047000 N 0.541
MDP0000143506 Malus domestica MDP0000143506 N 0.501
PRUPE_ppa013152mg Prunus persica PRUPE_ppa013152mg N 0.499
GLYMA08G08840 Glycine max GLYMA08G08840 N 0.492
GLYMA05G25900 Glycine max GLYMA05G25900 N 0.492
orange1.1g031573m.g Citrus sinensis orange1.1g031573m.g N 0.492
Ciclev10017037m.g Citrus clementina Ciclev10017037m.g N 0.492
29693.m002035 Ricinus communis 29693.m002035 N 0.492
MTR_8g018100 Medicago truncatula MTR_8g018100 N 0.489
Carubv10024236m.g Capsella rubella Carubv10024236m.g N 0.481
Ca_05162 Cicer arietinum Ca_05162 N 0.481
Ca_05164 Cicer arietinum Ca_05164 N 0.481
MDP0000695104 Malus domestica MDP0000695104 N 0.481
Bostr.23794s0665 Boechera stricta Bostr.23794s0665 N 0.481
Cagra.7352s0006 Capsella grandiflora Cagra.7352s0006 N 0.481
AMTR_s00014p00061870 Amborella trichopoda AMTR_s00014p00061870 N 0.481
Eucgr.D00306 Eucalyptus grandis Eucgr.D00306 N 0.481
Pavir.J05892 Panicum virgatum Pavir.J05892 N 0.476
SapurV1A.0560s0060 Salix purpurea SapurV1A.0560s0060 N 0.473
gene30574-v1.0-hybrid Fragaria vesca gene30574-v1.0-hybrid N 0.473
POPTR_0004s13630 Populus trichocarpa POPTR_0004s13630 N 0.473
F775_05073 Aegilops tauschii F775_05073 I 0.468
TRAES3BF031900060CFD_g Triticum aestivum TRAES3BF031900060CFD_g I 0.468
MTR_4g094622 Medicago truncatula MTR_4g094622 N 0.466
mgf009922m Mimulus guttatus mgf009922m N 0.463
PK22924.1 Cannabis sativa PK22924.1 N 0.462
cassava6449.valid.m1 Manihot esculenta cassava6449.valid.m1 N 0.462
GLYMA03G08270 Glycine max GLYMA03G08270 I 0.461
GLYMA01G28820 Glycine max GLYMA01G28820 I 0.461
Aquca_004_00335 Aquilegia coerulea Aquca_004_00335 I 0.458
MLOC_7069 Hordeum vulgare MLOC_7069 N 0.457
GRMZM5G834758 Zea mays GRMZM5G834758 I 0.455
BRADI1G29730 Brachypodium distachyon BRADI1G29730 I 0.455
BRADI2G45927 Brachypodium distachyon BRADI2G45927 I 0.455
Si007288m.g Setaria italica Si007288m.g I 0.455
Si003021m.g Setaria italica Si003021m.g N 0.450
Bra021911 Brassica rapa Bra021911 N 0.447
Bo4g182600 Brassica oleracea Bo4g182600 N 0.447
AT2G34450 Arabidopsis thaliana AT2G34450 N 0.447
cassava7606.valid.m1 Manihot esculenta cassava7606.valid.m1 N 0.444
GSMUA_Achr4G07950_001 Musa acuminata GSMUA_Achr4G07950_001 N 0.441
HelroG187893 Helobdella robusta HelroG187893 N 0.440
OB01G34910 Oryza brachyantha OB01G34910 I 0.436
GSMUA_Achr4G15000_001 Musa acuminata GSMUA_Achr4G15000_001 N 0.431
OGLUM01G29550 Oryza glumaepatula OGLUM01G29550 N 0.425
ORGLA01G0210300 Oryza glaberrima ORGLA01G0210300 N 0.425
OS01G0666200 Oryza sativa OS01G0666200 N 0.425
OMERI01G23390 Oryza meridionalis OMERI01G23390 N 0.425
BGIOSGA004165 Oryza indica BGIOSGA004165 N 0.425
OBART01G25720 Oryza barthii OBART01G25720 N 0.425
ORUFI01G28620 Oryza rufipogon ORUFI01G28620 N 0.425
BGIOSGA004167 Oryza indica BGIOSGA004167 N 0.425
Lus10025391.g Linum usitatissimum Lus10025391.g N 0.423
Lus10015268.g Linum usitatissimum Lus10015268.g N 0.423
Thhalv10017360m.g Eutrema salsugineum Thhalv10017360m.g N 0.420
Sb03g030540 Sorghum bicolor Sb03g030540 N 0.418
fgenesh2_pg.C_Chr_03000283 Micromonas sp RCC299 fgenesh2_pg.C_Chr_03000283 N 0.417
Gorai.013G018500 Gossypium raimondii Gorai.013G018500 I 0.415