evm.TU.supercontig_247.1 (Carica papaya)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 evm.TU.supercontig_247.1 T334496_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
evm.model.supercontig_247.1 Sox 111 178

Links

Other Sox family TFs
Other Carica papaya TFs

78 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
Si014434m.g Setaria italica Si014434m.g N 0.643
MDP0000205665 Malus domestica MDP0000205665 I 0.620
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.613
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.613
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.611
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.609
Pm006054 Prunus mume Pm006054 I 0.609
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.604
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.600
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.566
OS08G0101100 Oryza sativa OS08G0101100 I 0.566
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.566
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.566
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.566
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.566
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.566
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.566
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.566
OBART08G00070 Oryza barthii OBART08G00070 I 0.566
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.548
OB08G10120 Oryza brachyantha OB08G10120 N 0.547
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.546
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.546
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.541
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.539
TCM_007659 Theobroma cacao TCM_007659 I 0.539
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.532
Bra029371 Brassica rapa Bra029371 I 0.530
Bo2g160920 Brassica oleracea Bo2g160920 I 0.530
Cla009222 Citrullus lanatus Cla009222 I 0.526
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.526
PK03866.1 Cannabis sativa PK03866.1 I 0.523
30131.m007272 Ricinus communis 30131.m007272 I 0.513
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.512
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.511
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.507
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.494
Pavir.Fb00026 Panicum virgatum Pavir.Fb00026 N 0.484
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.483
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.483
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.483
Bra026498 Brassica rapa Bra026498 I 0.472
Bo9g014140 Brassica oleracea Bo9g014140 I 0.472
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.469
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.469
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.467
MLOC_77667 Hordeum vulgare MLOC_77667 I 0.464
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.463
Traes_7BL_871FCAF2F Triticum aestivum Traes_7BL_871FCAF2F I 0.461
TRIUR3_35367 Triticum urartu TRIUR3_35367 I 0.461
Traes_7AL_959534EDB Triticum aestivum Traes_7AL_959534EDB I 0.461
Traes_7DL_824BFE90C Triticum aestivum Traes_7DL_824BFE90C I 0.461
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.459
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.453
MDOA007633 Musca domestica MDOA007633 N 0.443
GD25013 Drosophila simulans FBgn0196325 N 0.443
GJ21774 Drosophila virilis FBgn0208892 N 0.443
GG19998 Drosophila erecta FBgn0112197 N 0.443
GE11532 Drosophila yakuba FBgn0229332 N 0.443
Ssrp Drosophila melanogaster FBgn0010278 N 0.443
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.442
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.442
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.442
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.442
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.441
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.440
GH21151 Drosophila grimshawi FBgn0128613 N 0.436
GF12460 Drosophila ananassae FBgn0089497 N 0.434
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.432
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.431
mgf009124m Mimulus guttatus mgf009124m N 0.431
Ca_05351 Cicer arietinum Ca_05351 I 0.422
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.420
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.420
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.420
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.420
Cmyd_10015367 Chelonia mydas Cmyd_10015367 N 0.417
HHAL000319-PA Halyomorpha halys HHAL000319-PA N 0.416