Bo2g160920 (Brassica oleracea)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 Bo2g160920 T326650_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.426 0.567
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo2g160920.1 Sox 123 189

Links

Other Sox family TFs
Other Brassica oleracea TFs

111 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra029371 Brassica rapa Bra029371 I 0.741
Thhalv10004817m.g Eutrema salsugineum Thhalv10004817m.g N 0.675
Pm006054 Prunus mume Pm006054 I 0.658
PRUPE_ppa026912mg Prunus persica PRUPE_ppa026912mg I 0.658
SapurV1A.0766s0120 Salix purpurea SapurV1A.0766s0120 I 0.647
MDP0000205665 Malus domestica MDP0000205665 I 0.639
Bra026498 Brassica rapa Bra026498 I 0.636
Bo9g014140 Brassica oleracea Bo9g014140 I 0.636
Cagra.0086s0060 Capsella grandiflora Cagra.0086s0060 I 0.625
Carubv10001858m.g Capsella rubella Carubv10001858m.g I 0.625
Cla009222 Citrullus lanatus Cla009222 I 0.612
Cucsa.300030 Cucumis sativus Cucsa.300030 I 0.612
HMGB6 Populus trichocarpa POPTR_0007s15320 I 0.609
Bostr.10199s0131 Boechera stricta Bostr.10199s0131 N 0.598
30131.m007272 Ricinus communis 30131.m007272 I 0.593
TCM_007659 Theobroma cacao TCM_007659 I 0.573
HMGB6 Vitis vinifera VIT_10s0071g00870 I 0.563
OBART08G00070 Oryza barthii OBART08G00070 I 0.563
ORUFI08G00080 Oryza rufipogon ORUFI08G00080 I 0.563
OS08G0101100 Oryza sativa OS08G0101100 I 0.563
OLONG_014445 Oryza longistaminata OLONG_014445 I 0.563
ONIVA08G00070 Oryza nivara ONIVA08G00070 I 0.563
Gorai.008G147700 Gossypium raimondii Gorai.008G147700 I 0.563
OGLUM08G00090 Oryza glumaepatula OGLUM08G00090 I 0.563
OPUNC08G00150 Oryza punctata OPUNC08G00150 I 0.563
BGIOSGA027819 Oryza indica BGIOSGA027819 I 0.563
BGIOSGA027814 Oryza indica BGIOSGA027814 I 0.563
PGSC0003DMG400025304 Solanum tuberosum PGSC0003DMG400025304 I 0.556
fgenesh2_kg.6__1935__AT5G23420.1 Arabidopsis lyrata fgenesh2_kg.6__1935__AT5G23420.1 N 0.556
mgf009124m Mimulus guttatus mgf009124m N 0.551
AMTR_s00171p00070550 Amborella trichopoda AMTR_s00171p00070550 I 0.549
PK03866.1 Cannabis sativa PK03866.1 I 0.548
OB08G10120 Oryza brachyantha OB08G10120 N 0.545
orange1.1g026850m.g Citrus sinensis orange1.1g026850m.g N 0.537
Ciclev10016587m.g Citrus clementina Ciclev10016587m.g N 0.537
HMGB7 Arabidopsis thaliana AT5G23420 N 0.534
scaffold_602413.1 Arabidopsis lyrata scaffold_602413.1 N 0.534
Si014434m.g Setaria italica Si014434m.g N 0.531
evm.TU.supercontig_247.1 Carica papaya evm.TU.supercontig_247.1 N 0.530
Eucgr.J00336 Eucalyptus grandis Eucgr.J00336 I 0.528
GRMZM2G125648 Zea mays GRMZM2G125648 N 0.526
Lus10041009.g Linum usitatissimum Lus10041009.g N 0.521
cassava1392.valid.m1 Manihot esculenta cassava1392.valid.m1 I 0.519
Solyc04g008820.2 Solanum lycopersicum Solyc04g008820.2 I 0.509
GLYMA20G23370 Glycine max GLYMA20G23370 I 0.506
GLYMA10G43440 Glycine max GLYMA10G43440 I 0.506
Sb07g000230 Sorghum bicolor Sb07g000230 N 0.499
Pavir.J10680 Panicum virgatum Pavir.J10680 N 0.496
AMAG_00757 Allomyces macrogynus AMAG_00757 N 0.495
AMAG_02260 Allomyces macrogynus AMAG_02260 N 0.495
GSMUA_AchrUn_randomG05290_001 Musa acuminata GSMUA_AchrUn_randomG05290_001 I 0.486
Ca_05351 Cicer arietinum Ca_05351 I 0.486
PDK_20s1355261g001 Phoenix dactylifera PDK_20s1355261g001 N 0.480
chr5.CM0180.220.nd Lotus japonicus chr5.CM0180.220.nd I 0.478
SNAPOd2T00000181001 Oikopleura dioica SNAPOd2T00000181001 N 0.476
estExt_fgenesh1_pm.C_880025 Physcomitrella patens estExt_fgenesh1_pm.C_880025 I 0.473
PDK_20s1709771g002 Phoenix dactylifera PDK_20s1709771g002 N 0.472
MTR_1g115220 Medicago truncatula MTR_1g115220 I 0.470
AAEL011425 Aedes aegypti AAEL011425 I 0.467
gw1.106.60.1 Physcomitrella patens gw1.106.60.1 I 0.463
gw1.106.59.1 Physcomitrella patens gw1.106.59.1 I 0.463
fgenesh1_pg.4_#_114 Coccomyxa subellipsoidea C169 fgenesh1_pg.4_#_114 N 0.459
fgeneshCV_pg.C_scaffold_4000123 Chlorella vulgaris fgeneshCV_pg.C_scaffold_4000123 N 0.459
YQE_02071 Dendroctonus ponderosae YQE_02071 N 0.457
BGIOSGA023639 Oryza indica BGIOSGA023639 I 0.454
OESDEN_24828 Oesophagostomum dentatum OESDEN_24828 N 0.447
Chro.20230 Cryptosporidium hominis Chro.20230 N 0.445
cgd2_2120 Cryptosporidium parvum cgd2_2120 N 0.445
MTR_7g068280 Medicago truncatula MTR_7g068280 I 0.435
LjT35D08.150.nd Lotus japonicus LjT35D08.150.nd I 0.435
BRADI3G12920 Brachypodium distachyon BRADI3G12920 I 0.434
CpipJ_CPIJ002953 Culex pipiens CpipJ_CPIJ002953 N 0.433
CpipJ_CPIJ020011 Culex pipiens CpipJ_CPIJ020011 I 0.433
cassava23716.valid.m1 Manihot esculenta cassava23716.valid.m1 I 0.433
LPERR08G00140 Leersia perrieri LPERR08G00140 N 0.433
CPIJ002953 Culex quinquefasciatus CPIJ002953 N 0.433
CPIJ020011 Culex quinquefasciatus CPIJ020011 I 0.433
L798_13679 Zootermopsis nevadensis L798_13679 N 0.431
PTRK_0001490800 Parastrongyloides trichosuri PTRK_0001490800 N 0.431
OSTLU_15773 Ostreococcus lucimarinus OSTLU_15773 N 0.431
Aquca_035_00040 Aquilegia coerulea Aquca_035_00040 I 0.430
Lus10035511.g Linum usitatissimum Lus10035511.g I 0.429
29600.m000548 Ricinus communis 29600.m000548 I 0.429
Cflo_11824--XP_001120264.1_APIME Camponotus floridanus Cflo_11824--XP_001120264.1_APIME N 0.428
Hsal_00538--XP_001120264.1_APIME Harpegnathos saltator Hsal_00538--XP_001120264.1_APIME N 0.428
HMG-1 Pisum sativum Q41026_PEA D 0.426
ENSMMUP00000037751 Macaca fascicularis ENSMMUP00000037751 N 0.425
ACEP16621 Atta cephalotes ACEP16621 N 0.425
e_gw1.6.1001.1 Ostreococcus RCC809 e_gw1.6.1001.1 N 0.424
HMGB1 Arabidopsis thaliana AT3G51880 I 0.423
Thhalv10010751m.g Eutrema salsugineum Thhalv10010751m.g I 0.423
HMGB1 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5001281 I 0.423
MTR_3g115580 Medicago truncatula MTR_3g115580 I 0.423
Cagra.1043s0022 Capsella grandiflora Cagra.1043s0022 I 0.423
Bostr.6864s0060 Boechera stricta Bostr.6864s0060 I 0.423
HMEL015307 Heliconius melpomene HMEL015307 N 0.422
HMGB2 Arabidopsis lyrata fgenesh2_kg.1__2255__AT1G20693.2 I 0.422
LDEC020995 Leptinotarsa decemlineata LDEC020995 N 0.422
Bostr.7128s0663 Boechera stricta Bostr.7128s0663 I 0.422
Carubv10010586m.g Capsella rubella Carubv10010586m.g I 0.422
HMGB2 Arabidopsis thaliana AT1G20693 I 0.422
Cagra.6160s0028 Capsella grandiflora Cagra.6160s0028 I 0.422
BGIBMGA005288 Bombyx mori BGIBMGA005288 N 0.422
PPAI002521 Phlebotomus papatasi PPAI002521 N 0.420
Bo7g101270 Brassica oleracea Bo7g101270 I 0.418
AAEL002381 Aedes aegypti AAEL002381 N 0.417
tetur02g08250 Tetranychus urticae tetur02g08250 N 0.416
Ca_19340 Cicer arietinum Ca_19340 I 0.416
Ssrp Drosophila melanogaster FBgn0010278 N 0.415
GD25013 Drosophila simulans FBgn0196325 N 0.415
GF12460 Drosophila ananassae FBgn0089497 N 0.415