GPLIN_000847800 (Globodera pallida)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 GPLIN_000847800 T336347_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_000847800 Sox 1 55

Links

Other Sox family TFs
Other Globodera pallida TFs

23 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SVUK_0000827101 Strongylus vulgaris SVUK_0000827101 N 0.565
D917_08464 Trichinella nativa D917_08464 N 0.550
D917_01243 Trichinella nativa D917_01243 N 0.550
MCINX003696 Melitaea cinxia MCINX003696 N 0.531
BGLB013830 Biomphalaria glabrata BGLB013830 N 0.497
Gorai.002G115100 Gossypium raimondii Gorai.002G115100 I 0.494
orange1.1g031906m.g Citrus sinensis orange1.1g031906m.g I 0.494
DILT_0001977801 Diphyllobothrium latum DILT_0001977801 N 0.486
GLYMA20G01570 Glycine max GLYMA20G01570 N 0.481
MLOC_68913 Hordeum vulgare MLOC_68913 N 0.478
GPLIN_000239300 Globodera pallida GPLIN_000239300 N 0.477
Traes_7BL_F45C15FA2 Triticum aestivum Traes_7BL_F45C15FA2 N 0.476
TTAC_0000838901 Hydatigera taeniaeformis TTAC_0000838901 N 0.475
MDP0000242568 Malus domestica MDP0000242568 I 0.466
TRIUR3_17277 Triticum urartu TRIUR3_17277 N 0.451
Traes_7AL_364A6E96F Triticum aestivum Traes_7AL_364A6E96F N 0.448
EFA77534.1 Polysphondylium pallidum EFA77534.1 N 0.448
Traes_7DL_0CEFCB39D Triticum aestivum Traes_7DL_0CEFCB39D N 0.448
LCUP018488 Lucilia cuprina LCUP018488 N 0.446
PDK_20s1781681g001 Phoenix dactylifera PDK_20s1781681g001 N 0.445
gw1.88.46.1 Fragilariopsis cylindrus gw1.88.46.1 N 0.443
HelroG167700 Helobdella robusta HelroG167700 N 0.433
Traes_3DL_21C50DDF5 Triticum aestivum Traes_3DL_21C50DDF5 N 0.422