Gorai.006G207800 (Gossypium raimondii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Gorai.006G207800 T008566_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT5G65130
M06686_2.00 		Arabidopsis thaliana
YCDYCDCCRCCGCCN
NGGCGGYGGHGRHGR		 Dap-seq
OMalley et al.(2016)
At5g65130_col_a 		0.692 0.760
AT5G65130
M06687_2.00 		Arabidopsis thaliana
NNNNHNNHDSCRCCGMCMW
WKGKCGGYGSHDNNDNNNN		 Dap-seq
OMalley et al.(2016)
At5g65130_colamp_a 		0.692 0.760
ERF054
M06647_2.00 		Arabidopsis thaliana
NNNNNNNNNHHDSCRCCGHC
GDCGGYGSHDDNNNNNNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_col_a 		0.679 0.780
ERF054
M06648_2.00 		Arabidopsis thaliana
NNNNHDBCRCCGHCM
KGDCGGYGVHDNNNN		 Dap-seq
OMalley et al.(2016)
At4g28140_colamp_a 		0.679 0.780
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G207800.1 AP2 109 160

Links

Other AP2 family TFs
Other Gossypium raimondii TFs

116 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28206.m000104 Ricinus communis 28206.m000104 I 0.680
30190.m010825 Ricinus communis 30190.m010825 I 0.711
AMTR_s00009p00268560 Amborella trichopoda AMTR_s00009p00268560 I 0.683
AMTR_s00107p00095070 Amborella trichopoda AMTR_s00107p00095070 I 0.689
Aquca_014_00591 Aquilegia coerulea Aquca_014_00591 I 0.680
Aquca_037_00132 Aquilegia coerulea Aquca_037_00132 I 0.711
ERF061 Arabidopsis thaliana AT1G64380 I 0.711
ERF054 Arabidopsis thaliana AT4G28140 D 0.679
AT5G65130 Arabidopsis thaliana AT5G65130 D 0.692
BGIOSGA017525 Oryza indica BGIOSGA017525 N 0.799
Bo7g119000 Brassica oleracea Bo7g119000 I 0.677
Bo8g054130 Brassica oleracea Bo8g054130 I 0.679
Bo9g030900 Brassica oleracea Bo9g030900 I 0.698
Bostr.0568s0279 Boechera stricta Bostr.0568s0279 I 0.698
Bostr.29223s0053 Boechera stricta Bostr.29223s0053 I 0.711
Bostr.7867s0648 Boechera stricta Bostr.7867s0648 I 0.679
Bra010383 Brassica rapa Bra010383 I 0.679
Bra017879 Brassica rapa Bra017879 I 0.677
Bra027697 Brassica rapa Bra027697 I 0.698
BRADI2G15847 Brachypodium distachyon BRADI2G15847 N 0.804
Cagra.0062s0002 Capsella grandiflora Cagra.0062s0002 I 0.711
Cagra.0917s0073 Capsella grandiflora Cagra.0917s0073 I 0.698
Cagra.1225s0083 Capsella grandiflora Cagra.1225s0083 I 0.679
Carubv10005203m.g Capsella rubella Carubv10005203m.g I 0.679
Carubv10020622m.g Capsella rubella Carubv10020622m.g I 0.711
Carubv10026925m.g Capsella rubella Carubv10026925m.g I 0.698
cassava23925.valid.m1 Manihot esculenta cassava23925.valid.m1 I 0.680
cassava31195.valid.m1 Manihot esculenta cassava31195.valid.m1 I 0.680
cassava42814.valid.m1 Manihot esculenta cassava42814.valid.m1 I 0.709
Ca_09578 Cicer arietinum Ca_09578 I 0.680
Ca_15031 Cicer arietinum Ca_15031 I 0.680
chr2.CM0060.390.nc Lotus japonicus chr2.CM0060.390.nc I 0.711
chr4.CM0025.250.nd Lotus japonicus chr4.CM0025.250.nd I 0.679
chr5.CM0909.290.nc Lotus japonicus chr5.CM0909.290.nc I 0.686
Ciclev10021265m.g Citrus clementina Ciclev10021265m.g I 0.697
Ciclev10025961m.g Citrus clementina Ciclev10025961m.g I 0.677
Cla011093 Citrullus lanatus Cla011093 I 0.711
Cla011559 Citrullus lanatus Cla011559 I 0.699
Cucsa.303840 Cucumis sativus Cucsa.303840 I 0.699
Eucgr.D01731 Eucalyptus grandis Eucgr.D01731 I 0.686
Eucgr.E00857 Eucalyptus grandis Eucgr.E00857 I 0.711
Eucgr.F02440 Eucalyptus grandis Eucgr.F02440 I 0.683
evm.TU.supercontig_79.43 Carica papaya evm.TU.supercontig_79.43 I 0.767
fgenesh2_kg.2__42__AT1G64380.1 Arabidopsis lyrata fgenesh2_kg.2__42__AT1G64380.1 I 0.711
fgenesh2_kg.7__1395__AT4G28140.1 Arabidopsis lyrata fgenesh2_kg.7__1395__AT4G28140.1 I 0.679
gene32084-v1.0-hybrid Fragaria vesca gene32084-v1.0-hybrid I 0.711
GLYMA01G43450 Glycine max GLYMA01G43450 I 0.711
GLYMA11G02050 Glycine max GLYMA11G02050 I 0.711
Gorai.003G038200 Gossypium raimondii Gorai.003G038200 I 0.680
Gorai.004G133800 Gossypium raimondii Gorai.004G133800 I 0.680
Gorai.007G026200 Gossypium raimondii Gorai.007G026200 N 0.745
Gorai.007G240700 Gossypium raimondii Gorai.007G240700 I 0.691
Gorai.008G253900 Gossypium raimondii Gorai.008G253900 I 0.820
Gorai.012G130600 Gossypium raimondii Gorai.012G130600 I 0.713
GRMZM2G100982 Zea mays GRMZM2G100982 I 0.788
GRMZM5G846057 Zea mays GRMZM5G846057 I 0.788
GSMUA_Achr1G00070_001 Musa acuminata GSMUA_Achr1G00070_001 I 0.684
GSMUA_Achr1G27990_001 Musa acuminata GSMUA_Achr1G27990_001 N 0.727
LPERR05G22130 Leersia perrieri LPERR05G22130 N 0.799
Lus10001898.g Linum usitatissimum Lus10001898.g I 0.711
Lus10003889.g Linum usitatissimum Lus10003889.g I 0.711
MDP0000292965 Malus domestica MDP0000292965 I 0.711
MDP0000861708 Malus domestica MDP0000861708 I 0.711
mgf002388m Mimulus guttatus mgf002388m I 0.683
mgf016403m Mimulus guttatus mgf016403m I 0.771
mgf021167m Mimulus guttatus mgf021167m I 0.711
mgf022495m Mimulus guttatus mgf022495m I 0.682
mgf023311m Mimulus guttatus mgf023311m I 0.680
MLOC_53577 Hordeum vulgare MLOC_53577 N 0.798
MTR_5g009410 Medicago truncatula MTR_5g009410 I 0.698
MTR_8g090350 Medicago truncatula MTR_8g090350 I 0.680
OGLUM05G28130 Oryza glumaepatula OGLUM05G28130 N 0.799
ONIVA05G28560 Oryza nivara ONIVA05G28560 N 0.799
OPUNC05G24070 Oryza punctata OPUNC05G24070 N 0.799
orange1.1g018103m.g Citrus sinensis orange1.1g018103m.g I 0.677
orange1.1g045091m.g Citrus sinensis orange1.1g045091m.g I 0.697
ORGLA03G0412600 Oryza glaberrima ORGLA03G0412600 N 0.799
ORGLA05G0229700 Oryza glaberrima ORGLA05G0229700 N 0.799
ORUFI05G28440 Oryza rufipogon ORUFI05G28440 N 0.799
OS05G0572000 Oryza sativa OS05G0572000 N 0.799
Pavir.J01332 Panicum virgatum Pavir.J01332 N 0.799
Pavir.J10163 Panicum virgatum Pavir.J10163 N 0.799
PGSC0003DMG400005837 Solanum tuberosum PGSC0003DMG400005837 I 0.678
PGSC0003DMG400008538 Solanum tuberosum PGSC0003DMG400008538 I 0.680
PGSC0003DMG400012154 Solanum tuberosum PGSC0003DMG400012154 I 0.698
PGSC0003DMG400018352 Solanum tuberosum PGSC0003DMG400018352 I 0.683
PGSC0003DMG400020625 Solanum tuberosum PGSC0003DMG400020625 I 0.680
PK09586.1 Cannabis sativa PK09586.1 I 0.698
PK18885.1 Cannabis sativa PK18885.1 I 0.680
PK27482.1 Cannabis sativa PK27482.1 I 0.683
Pm024053 Prunus mume Pm024053 I 0.711
POPTR_0001s10540 Populus trichocarpa POPTR_0001s10540 I 0.711
POPTR_0002s09480 Populus trichocarpa POPTR_0002s09480 I 0.683
POPTR_0003s13910 Populus trichocarpa POPTR_0003s13910 I 0.708
POPTR_0005s07900 Populus trichocarpa POPTR_0005s07900 I 0.677
POPTR_0007s05690 Populus trichocarpa POPTR_0007s05690 I 0.680
PRUPE_ppa009005mg Prunus persica PRUPE_ppa009005mg I 0.711
SapurV1A.0010s0170 Salix purpurea SapurV1A.0010s0170 I 0.683
SapurV1A.0035s0570 Salix purpurea SapurV1A.0035s0570 I 0.711
SapurV1A.0075s0120 Salix purpurea SapurV1A.0075s0120 I 0.680
SapurV1A.0237s0310 Salix purpurea SapurV1A.0237s0310 I 0.711
SapurV1A.0684s0120 Salix purpurea SapurV1A.0684s0120 I 0.680
Sb09g029070 Sorghum bicolor Sb09g029070 N 0.804
scaffold_803239.1 Arabidopsis lyrata scaffold_803239.1 I 0.692
SELMODRAFT_15839 Selaginella moellendorffii SELMODRAFT_15839 I 0.688
Solyc04g054910.2 Solanum lycopersicum Solyc04g054910.2 I 0.680
Solyc07g054220.1 Solanum lycopersicum Solyc07g054220.1 I 0.683
Solyc08g082210.2 Solanum lycopersicum Solyc08g082210.2 I 0.698
Solyc12g056980.1 Solanum lycopersicum Solyc12g056980.1 I 0.680
TCM_001147 Theobroma cacao TCM_001147 I 0.680
TCM_016452 Theobroma cacao TCM_016452 I 0.696
Thhalv10023588m.g Eutrema salsugineum Thhalv10023588m.g I 0.711
Thhalv10025862m.g Eutrema salsugineum Thhalv10025862m.g I 0.681
Thhalv10025958m.g Eutrema salsugineum Thhalv10025958m.g I 0.677
VIT_02s0025g01360 Vitis vinifera VIT_02s0025g01360 I 0.709
VIT_19s0014g03180 Vitis vinifera VIT_19s0014g03180 I 0.707