chr1.LjT01D01.90.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr1.LjT01D01.90.nd T010153_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
DREB2A
M06655_2.00 		Arabidopsis thaliana
NNNNHDHMACCGMCWYHNNNN
NNNNDRWGKCGGTKDHDNNNN		 Dap-seq
OMalley et al.(2016)
DREB2_col_a 		0.732 0.811
DREB2A
M06656_2.00 		Arabidopsis thaliana
NHNHMACCGMCWTWD
HWAWGKCGGTKDNDN		 Dap-seq
OMalley et al.(2016)
DREB2_colamp_a 		0.732 0.811
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr1.LjT01D01.90.nd AP2 76 134

Links

Other AP2 family TFs
Other Lotus japonicus TFs

30 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29820.m001008 Ricinus communis 29820.m001008 I 0.742
DREB2A Arabidopsis thaliana AT5G05410 D 0.732
Bo1g141310 Brassica oleracea Bo1g141310 I 0.700
Bo2g006960 Brassica oleracea Bo2g006960 I 0.719
Bo3g063910 Brassica oleracea Bo3g063910 I 0.682
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I 0.732
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I 0.710
Bra001386 Brassica rapa Bra001386 I 0.683
Bra005852 Brassica rapa Bra005852 I 0.711
Bra028759 Brassica rapa Bra028759 I 0.719
Bra034159 Brassica rapa Bra034159 I 0.690
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I 0.732
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I 0.712
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I 0.743
Carubv10001099m.g Capsella rubella Carubv10001099m.g I 0.732
Carubv10013771m.g Capsella rubella Carubv10013771m.g I 0.712
Carubv10023556m.g Capsella rubella Carubv10023556m.g I 0.743
cassava46663.m1 Manihot esculenta cassava46663.m1 I 0.714
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I 0.704
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I 0.732
GLYMA07G19221 Glycine max GLYMA07G19221 I 0.816
GLYMA18G43750 Glycine max GLYMA18G43750 I 0.806
MTR_7g070220 Medicago truncatula MTR_7g070220 I 0.723
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I 0.689
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I 0.681
PGSC0003DMG401023951 Solanum tuberosum PGSC0003DMG401023951 I 0.742
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I 0.681
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I 0.736
TCM_021596 Theobroma cacao TCM_021596 I 0.723
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I 0.711