Gorai.006G120400 (Gossypium raimondii)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02362 (B3) IPR003340 Gorai.006G120400 T023339_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF3
M00852_2.00 		Arabidopsis thaliana
NKGTYBNN
NNVRACMN		 PBM
Franco-Zorrilla et al.(2014)
ETTIN 		0.857 0.857
ARF2
M06714_2.00 		Arabidopsis thaliana
NHTGTCKSHD
HDSMGACADN		 Dap-seq
OMalley et al.(2016)
ARF2_col_v31 		0.755 0.755
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.704 0.704
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.006G120400.1 B3 159 261
Gorai.006G120400.2 B3 159 261
Gorai.006G120400.3 B3 159 261
Gorai.006G120400.4 B3 159 261
Gorai.006G120400.5 B3 159 261
Gorai.006G120400.6 B3 159 261

Links

Other B3 family TFs
Other Gossypium raimondii TFs

701 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
27524.m000293 Ricinus communis 27524.m000293 N 0.000
28207.m000107 Ricinus communis 28207.m000107 N 0.000
29661.m000902 Ricinus communis 29661.m000902 N 0.000
AC234149.1_FG002 Zea mays AC234149.1_FG002 N 0.000
LBD40 Arabidopsis lyrata Al_scaffold_0002_1337 N 0.000
AMTR_s00079p00088960 Amborella trichopoda AMTR_s00079p00088960 N 0.000
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N 0.000
Aquca_026_00293 Aquilegia coerulea Aquca_026_00293 N 0.000
Aquca_042_00143 Aquilegia coerulea Aquca_042_00143 N 0.000
LBD40 Arabidopsis thaliana AT1G67100 N 0.000
LBD42 Arabidopsis thaliana AT1G68510 N 0.000
LBD41 Arabidopsis thaliana AT3G02550 N 0.000
LBD38 Arabidopsis thaliana AT3G49940 N 0.000
BGIOSGA001546 Oryza indica BGIOSGA001546 N 0.000
BGIOSGA002703 Oryza indica BGIOSGA002703 N 0.000
BGIOSGA010454 Oryza indica BGIOSGA010454 N 0.000
Bo1g156310 Brassica oleracea Bo1g156310 N 0.000
Bo2g055410 Brassica oleracea Bo2g055410 N 0.000
Bo2g168020 Brassica oleracea Bo2g168020 N 0.000
Bo3g055690 Brassica oleracea Bo3g055690 N 0.000
Bo5g132850 Brassica oleracea Bo5g132850 N 0.000
Bo6g106960 Brassica oleracea Bo6g106960 N 0.000
Bo7g063630 Brassica oleracea Bo7g063630 N 0.000
Bo9g019150 Brassica oleracea Bo9g019150 N 0.000
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N 0.000
Bostr.1460s0172 Boechera stricta Bostr.1460s0172 N 0.000
Bostr.26959s0040 Boechera stricta Bostr.26959s0040 N 0.000
Bostr.26959s0198 Boechera stricta Bostr.26959s0198 N 0.000
Bostr.2902s0344 Boechera stricta Bostr.2902s0344 N 0.000
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N 0.000
Bra004315 Brassica rapa Bra004315 N 0.000
Bra012164 Brassica rapa Bra012164 N 0.000
Bra021433 Brassica rapa Bra021433 N 0.000
Bra031833 Brassica rapa Bra031833 N 0.000
Bra037847 Brassica rapa Bra037847 N 0.000
BRADI4G16740 Brachypodium distachyon BRADI4G16740 N 0.000
BRADI4G16750 Brachypodium distachyon BRADI4G16750 N 0.000
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N 0.000
Cagra.1194s0049 Capsella grandiflora Cagra.1194s0049 N 0.000
Cagra.3364s0006 Capsella grandiflora Cagra.3364s0006 N 0.000
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N 0.000
Cagra.6164s0006 Capsella grandiflora Cagra.6164s0006 N 0.000
Cagra.6845s0054 Capsella grandiflora Cagra.6845s0054 N 0.000
Carubv10000015m.g Capsella rubella Carubv10000015m.g N 0.000
Carubv10002654m.g Capsella rubella Carubv10002654m.g N 0.000
Carubv10015363m.g Capsella rubella Carubv10015363m.g N 0.000
Carubv10017944m.g Capsella rubella Carubv10017944m.g N 0.000
Carubv10021721m.g Capsella rubella Carubv10021721m.g N 0.000
Carubv10022391m.g Capsella rubella Carubv10022391m.g N 0.000
Carubv10027507m.g Capsella rubella Carubv10027507m.g N 0.000
cassava22449.valid.m1 Manihot esculenta cassava22449.valid.m1 N 0.000
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N 0.000
cassava38982.m1 Manihot esculenta cassava38982.m1 N 0.000
cassava43296.valid.m1 Manihot esculenta cassava43296.valid.m1 N 0.000
cassava60.valid.m1 Manihot esculenta cassava60.valid.m1 N 0.000
cassava6185.valid.m1 Manihot esculenta cassava6185.valid.m1 N 0.000
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N 0.000
Ca_09342 Cicer arietinum Ca_09342 N 0.000
Ca_22996 Cicer arietinum Ca_22996 N 0.000
chr1.LjT23D08.90.nc Lotus japonicus chr1.LjT23D08.90.nc N 0.000
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N 0.000
chr5.CM0200.600.nd Lotus japonicus chr5.CM0200.600.nd N 0.000
Ciclev10013705m.g Citrus clementina Ciclev10013705m.g N 0.000
Ciclev10016422m.g Citrus clementina Ciclev10016422m.g N 0.000
Ciclev10022068m.g Citrus clementina Ciclev10022068m.g N 0.000
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N 0.000
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N 0.000
Cla007208 Citrullus lanatus Cla007208 N 0.000
Cla019264 Citrullus lanatus Cla019264 N 0.000
Cla020705 Citrullus lanatus Cla020705 N 0.000
Cucsa.031350 Cucumis sativus Cucsa.031350 N 0.000
Cucsa.199060 Cucumis sativus Cucsa.199060 N 0.000
Cucsa.283560 Cucumis sativus Cucsa.283560 N 0.000
Eucgr.B03016 Eucalyptus grandis Eucgr.B03016 N 0.000
Eucgr.F02492 Eucalyptus grandis Eucgr.F02492 N 0.000
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N 0.000
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N 0.000
Eucgr.J01501 Eucalyptus grandis Eucgr.J01501 N 0.000
Eucgr.K02222 Eucalyptus grandis Eucgr.K02222 N 0.000
evm.TU.supercontig_1.42 Carica papaya evm.TU.supercontig_1.42 N 0.000
evm.TU.supercontig_106.63 Carica papaya evm.TU.supercontig_106.63 N 0.000
evm.TU.supercontig_282.15 Carica papaya evm.TU.supercontig_282.15 N 0.000
evm.TU.supercontig_3.514 Carica papaya evm.TU.supercontig_3.514 N 0.000
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N 0.000
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N 0.000
LBD42 Arabidopsis lyrata fgenesh2_kg.2__1100__AT1G68510.1 N 0.000
LBD41 Arabidopsis lyrata fgenesh2_kg.3__191__AT3G02550.1 N 0.000
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N 0.000
gene03741-v1.0-hybrid Fragaria vesca gene03741-v1.0-hybrid N 0.000
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N 0.000
gene10300-v1.0-hybrid Fragaria vesca gene10300-v1.0-hybrid N 0.000
GLYMA08G31143 Glycine max GLYMA08G31143 N 0.000
GLYMA08G48040 Glycine max GLYMA08G48040 N 0.000
GLYMA13G07590 Glycine max GLYMA13G07590 N 0.000
GLYMA18G53440 Glycine max GLYMA18G53440 N 0.000
GLYMA19G06280 Glycine max GLYMA19G06280 N 0.000
GLYMA20G24950 Glycine max GLYMA20G24950 N 0.000
Gorai.002G217800 Gossypium raimondii Gorai.002G217800 N 0.000
Gorai.005G190300 Gossypium raimondii Gorai.005G190300 N 0.000
Gorai.006G061200 Gossypium raimondii Gorai.006G061200 N 0.000
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N 0.000
Gorai.008G056000 Gossypium raimondii Gorai.008G056000 N 0.000
GRMZM2G060544 Zea mays GRMZM2G060544 N 0.000
GRMZM2G073044 Zea mays GRMZM2G073044 N 0.000
GRMZM2G132693 Zea mays GRMZM2G132693 N 0.000
GRMZM2G386674 Zea mays GRMZM2G386674 N 0.000
GSMUA_Achr1G20970_001 Musa acuminata GSMUA_Achr1G20970_001 N 0.000
GSMUA_Achr2G14600_001 Musa acuminata GSMUA_Achr2G14600_001 N 0.000
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N 0.000
GSMUA_Achr3G29520_001 Musa acuminata GSMUA_Achr3G29520_001 N 0.000
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N 0.000
GSMUA_Achr4G03700_001 Musa acuminata GSMUA_Achr4G03700_001 N 0.000
GSMUA_Achr4G06820_001 Musa acuminata GSMUA_Achr4G06820_001 N 0.000
GSMUA_Achr4G13790_001 Musa acuminata GSMUA_Achr4G13790_001 N 0.000
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N 0.000
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N 0.000
GSMUA_Achr9G00580_001 Musa acuminata GSMUA_Achr9G00580_001 N 0.000
GSMUA_Achr9G21360_001 Musa acuminata GSMUA_Achr9G21360_001 N 0.000
GSMUA_AchrUn_randomG00460_001 Musa acuminata GSMUA_AchrUn_randomG00460_001 N 0.000
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N 0.000
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N 0.000
LjSGA_023437.1 Lotus japonicus LjSGA_023437.1 N 0.000
LPERR01G15290 Leersia perrieri LPERR01G15290 N 0.000
LPERR03G19360 Leersia perrieri LPERR03G19360 N 0.000
Lus10028470.g Linum usitatissimum Lus10028470.g N 0.000
MDP0000136037 Malus domestica MDP0000136037 N 0.000
MDP0000233303 Malus domestica MDP0000233303 N 0.000
MDP0000794101 Malus domestica MDP0000794101 N 0.000
mgf007319m Mimulus guttatus mgf007319m N 0.000
mgf010898m Mimulus guttatus mgf010898m N 0.000
mgf011656m Mimulus guttatus mgf011656m N 0.000
mgf017960m Mimulus guttatus mgf017960m N 0.000
MLOC_58304 Hordeum vulgare MLOC_58304 N 0.000
MTR_4g095600 Medicago truncatula MTR_4g095600 N 0.000
MTR_6g018270 Medicago truncatula MTR_6g018270 N 0.000
MTR_7g007010 Medicago truncatula MTR_7g007010 N 0.000
OB01G11830 Oryza brachyantha OB01G11830 N 0.000
OB01G27020 Oryza brachyantha OB01G27020 N 0.000
OB03G31560 Oryza brachyantha OB03G31560 N 0.000
OBART01G01940 Oryza barthii OBART01G01940 N 0.000
OBART01G17510 Oryza barthii OBART01G17510 N 0.000
OBART03G22820 Oryza barthii OBART03G22820 N 0.000
OGLUM01G02100 Oryza glumaepatula OGLUM01G02100 N 0.000
OGLUM01G20320 Oryza glumaepatula OGLUM01G20320 N 0.000
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N 0.000
OLONG_015384 Oryza longistaminata OLONG_015384 N 0.000
OMERI01G01380 Oryza meridionalis OMERI01G01380 N 0.000
OMERI01G16320 Oryza meridionalis OMERI01G16320 N 0.000
OMERI03G20600 Oryza meridionalis OMERI03G20600 N 0.000
ONIVA01G02110 Oryza nivara ONIVA01G02110 N 0.000
ONIVA01G19320 Oryza nivara ONIVA01G19320 N 0.000
ONIVA03G24370 Oryza nivara ONIVA03G24370 N 0.000
OPUNC01G01670 Oryza punctata OPUNC01G01670 N 0.000
OPUNC01G18000 Oryza punctata OPUNC01G18000 N 0.000
OPUNC03G21330 Oryza punctata OPUNC03G21330 N 0.000
orange1.1g022591m.g Citrus sinensis orange1.1g022591m.g N 0.000
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N 0.000
orange1.1g038007m.g Citrus sinensis orange1.1g038007m.g N 0.000
orange1.1g045357m.g Citrus sinensis orange1.1g045357m.g N 0.000
ORGLA01G0016600 Oryza glaberrima ORGLA01G0016600 N 0.000
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N 0.000
ORUFI01G02010 Oryza rufipogon ORUFI01G02010 N 0.000
ORUFI01G19440 Oryza rufipogon ORUFI01G19440 N 0.000
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N 0.000
OS01G0511000 Oryza sativa OS01G0511000 N 0.000
OS03G0445700 Oryza sativa OS03G0445700 N 0.000
Pavir.Ea00650 Panicum virgatum Pavir.Ea00650 N 0.000
Pavir.Ea01295 Panicum virgatum Pavir.Ea01295 N 0.000
Pavir.Eb02390 Panicum virgatum Pavir.Eb02390 N 0.000
Pavir.J00526 Panicum virgatum Pavir.J00526 N 0.000
Pavir.J01483 Panicum virgatum Pavir.J01483 N 0.000
Pavir.J11724 Panicum virgatum Pavir.J11724 N 0.000
PGSC0003DMG400005719 Solanum tuberosum PGSC0003DMG400005719 N 0.000
PGSC0003DMG400012653 Solanum tuberosum PGSC0003DMG400012653 N 0.000
PGSC0003DMG400014547 Solanum tuberosum PGSC0003DMG400014547 N 0.000
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N 0.000
PK03169.1 Cannabis sativa PK03169.1 N 0.000
PK04548.1 Cannabis sativa PK04548.1 N 0.000
PK04625.1 Cannabis sativa PK04625.1 N 0.000
PK15647.1 Cannabis sativa PK15647.1 N 0.000
Pm029059 Prunus mume Pm029059 N 0.000
POPTR_0002s12020 Populus trichocarpa POPTR_0002s12020 N 0.000
POPTR_0004s09920 Populus trichocarpa POPTR_0004s09920 N 0.000
POPTR_0005s15670 Populus trichocarpa POPTR_0005s15670 N 0.000
POPTR_0005s18900 Populus trichocarpa POPTR_0005s18900 N 0.000
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N 0.000
POPTR_0008s11950 Populus trichocarpa POPTR_0008s11950 N 0.000
POPTR_0010s13480 Populus trichocarpa POPTR_0010s13480 N 0.000
POPTR_0012s05340 Populus trichocarpa POPTR_0012s05340 N 0.000
POPTR_0014s01770 Populus trichocarpa POPTR_0014s01770 N 0.000
PRUPE_ppa009213mg Prunus persica PRUPE_ppa009213mg N 0.000
PRUPE_ppa011233mg Prunus persica PRUPE_ppa011233mg N 0.000
SapurV1A.0078s0410 Salix purpurea SapurV1A.0078s0410 N 0.000
SapurV1A.0079s0150 Salix purpurea SapurV1A.0079s0150 N 0.000
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N 0.000
SapurV1A.0315s0090 Salix purpurea SapurV1A.0315s0090 N 0.000
SapurV1A.0851s0010 Salix purpurea SapurV1A.0851s0010 N 0.000
Sb01g032580 Sorghum bicolor Sb01g032580 N 0.000
Sb02g038030 Sorghum bicolor Sb02g038030 N 0.000
Sb03g007270 Sorghum bicolor Sb03g007270 N 0.000
Sb09g025700 Sorghum bicolor Sb09g025700 N 0.000
Sb09g025710 Sorghum bicolor Sb09g025710 N 0.000
Sb09g030780 Sorghum bicolor Sb09g030780 N 0.000
LBD38 Arabidopsis lyrata scaffold_502015.1 N 0.000
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N 0.000
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N 0.000
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N 0.000
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N 0.000
SELMODRAFT_61520 Selaginella moellendorffii SELMODRAFT_61520 N 0.000
Si002412m.g Setaria italica Si002412m.g N 0.000
Si022660m.g Setaria italica Si022660m.g N 0.000
Solyc02g085910.2 Solanum lycopersicum Solyc02g085910.2 N 0.000
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N 0.000
Solyc03g119530.2 Solanum lycopersicum Solyc03g119530.2 N 0.000
Solyc05g009320.2 Solanum lycopersicum Solyc05g009320.2 N 0.000
TCM_000766 Theobroma cacao TCM_000766 N 0.000
TCM_009888 Theobroma cacao TCM_009888 N 0.000
TCM_012338 Theobroma cacao TCM_012338 N 0.000
TCM_019459 Theobroma cacao TCM_019459 N 0.000
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N 0.000
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N 0.000
Thhalv10019048m.g Eutrema salsugineum Thhalv10019048m.g N 0.000
Thhalv10019494m.g Eutrema salsugineum Thhalv10019494m.g N 0.000
Thhalv10021328m.g Eutrema salsugineum Thhalv10021328m.g N 0.000
TRAES3BF008500030CFD_g Triticum aestivum TRAES3BF008500030CFD_g N 0.000
TRAES3BF008600030CFD_g Triticum aestivum TRAES3BF008600030CFD_g N 0.000
Traes_2AL_450404EA6 Triticum aestivum Traes_2AL_450404EA6 N 0.000
Traes_2BL_3A840DB921 Triticum aestivum Traes_2BL_3A840DB921 N 0.000
Traes_2DL_9D8B5B436 Triticum aestivum Traes_2DL_9D8B5B436 N 0.000
Traes_4BL_7F70575F9 Triticum aestivum Traes_4BL_7F70575F9 N 0.000
Traes_4DL_E0847FBC5 Triticum aestivum Traes_4DL_E0847FBC5 N 0.000
Traes_5BL_3EEBE3D51 Triticum aestivum Traes_5BL_3EEBE3D51 N 0.000
Traes_5BS_3EEBE3D51 Triticum aestivum Traes_5BS_3EEBE3D51 N 0.000
VIT_01s0011g03530 Vitis vinifera VIT_01s0011g03530 N 0.000
VIT_01s0011g03540 Vitis vinifera VIT_01s0011g03540 N 0.000
VIT_14s0006g02950 Vitis vinifera VIT_14s0006g02950 N 0.000
VIT_17s0000g03720 Vitis vinifera VIT_17s0000g03720 N 0.000