USF1 (Tursiops truncatus)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTTRG00000009151 T038013_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Usf1
M01732_2.00 		Mus musculus
NRYCACGTGNN
NNCACGTGRYN		 PBM
Weirauch et al.(2014)
pTH4376 		0.914 1.000
USF1
M02792_2.00 		Homo sapiens
RNCACGTGRY
RYCACGTGNY		 SELEX
Jolma et al.(2013)
USF1_1 		0.914 1.000
USF1
M04146_2.00 		Homo sapiens
NVCACGTGVCN
NGBCACGTGBN		 SELEX
Yin et al.(2017)
USF1_FL_HT-SELEX 		0.914 1.000
USF1
M08056_2.00 		Homo sapiens
RGTCACRTGVB
VBCAYGTGACY		 ChIP-seq
Mathelier et al.(2014)
MA0093.2 		0.914 1.000
USF1
M07807_2.00 		Homo sapiens
VGTCACGTGRBSVVV
BBBSVYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
A549_USF1_HudsonAlpha 		0.914 1.000
USF1
M07808_2.00 		Homo sapiens
VVGTCACGTGVBSVS
SBSVBCACGTGACBB		 ChIP-seq
Gerstein et al.(2012)
GM12878_USF1_HudsonAlpha 		0.914 1.000
USF1
M07809_2.00 		Homo sapiens
RGTCACGTGVBSVNN
NNBSVBCACGTGACY		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_USF1_HudsonAlpha 		0.914 1.000
USF1
M07810_2.00 		Homo sapiens
VGTCACGTGRB
VYCACGTGACB		 ChIP-seq
Gerstein et al.(2012)
HepG2_USF1_HudsonAlpha 		0.914 1.000
USF1
M07811_2.00 		Homo sapiens
NVGTCACGTGVSSV
BSSBCACGTGACBN		 ChIP-seq
Gerstein et al.(2012)
K562_USF1_HudsonAlpha 		0.914 1.000
USF1
M08733_2.00 		Homo sapiens
VGTCACGTGVBS
SVBCACGTGACB		 Misc
Kulakovskiy et al.(2013)
USF1_HUMAN.H11MO.0.A 		0.914 1.000
Usf1
M08756_2.00 		Mus musculus
NNGTCACGTGVBS
SVBCACGTGACNN		 Misc
Kulakovskiy et al.(2013)
USF1_MOUSE.H11MO.0.A 		0.914 1.000
USF1
M09460_2.00 		Homo sapiens
YCACGTGRBN
NVYCACGTGR		 Misc
Heinz et al.(2010)
GM12878-Usf1_GSE32465 		0.914 1.000
USF1
M09867_2.00 		Homo sapiens
NNRYCACGTGRYNN
NNRYCACGTGRYNN		 Transfac
Matys et al.(2006)
V$USF_01 		0.914 1.000
USF1
M09868_2.00 		Homo sapiens
NNRNCAYRTGNYNN
NNRNCAYRTGNYNN		 Transfac
Matys et al.(2006)
V$USF_02 		0.914 1.000
USF1
M09869_2.00 		Homo sapiens
HCACGTGH
DCACGTGD		 Transfac
Matys et al.(2006)
V$USF_C 		0.914 1.000
USF1
M04147_2.00 		Homo sapiens
VHCAYGTGAYN
NRTCACRTGDB		 SELEX
Yin et al.(2017)
USF1_FL_Methyl-HT-SELEX 		0.914 1.000
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTTRP00000008671 bHLH 200 255

Links

Other bHLH family TFs
Other Tursiops truncatus TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29661.m000902 Ricinus communis 29661.m000902 N
AMTR_s00137p00087340 Amborella trichopoda AMTR_s00137p00087340 N
LBD38 Arabidopsis thaliana AT3G49940 N
LBD37 Arabidopsis thaliana AT5G67420 N
BGIOSGA010258 Oryza indica BGIOSGA010258 N
BGIOSGA010454 Oryza indica BGIOSGA010454 N
BGIOSGA026049 Oryza indica BGIOSGA026049 N
Bo1g003550 Brassica oleracea Bo1g003550 N
Bo2g168020 Brassica oleracea Bo2g168020 N
Bo5g132850 Brassica oleracea Bo5g132850 N
Bo7g063630 Brassica oleracea Bo7g063630 N
Bo7g099150 Brassica oleracea Bo7g099150 N
Bo8g079200 Brassica oleracea Bo8g079200 N
Bo9g019150 Brassica oleracea Bo9g019150 N
Bostr.0568s0168 Boechera stricta Bostr.0568s0168 N
Bostr.6864s0247 Boechera stricta Bostr.6864s0247 N
Bostr.7867s1612 Boechera stricta Bostr.7867s1612 N
Bra011772 Brassica rapa Bra011772 N
Bra012164 Brassica rapa Bra012164 N
Bra012913 Brassica rapa Bra012913 N
Bra031833 Brassica rapa Bra031833 N
Bra036040 Brassica rapa Bra036040 N
Bra037847 Brassica rapa Bra037847 N
BRADI1G14780 Brachypodium distachyon BRADI1G14780 N
BRADI1G22920 Brachypodium distachyon BRADI1G22920 N
Cagra.0342s0030 Capsella grandiflora Cagra.0342s0030 N
Cagra.10957s0002 Capsella grandiflora Cagra.10957s0002 N
Cagra.4491s0014 Capsella grandiflora Cagra.4491s0014 N
Carubv10005616m.g Capsella rubella Carubv10005616m.g N
Carubv10017944m.g Capsella rubella Carubv10017944m.g N
Carubv10027507m.g Capsella rubella Carubv10027507m.g N
cassava226.valid.m1 Manihot esculenta cassava226.valid.m1 N
cassava7497.valid.m1 Manihot esculenta cassava7497.valid.m1 N
cassava9459.m1 Manihot esculenta cassava9459.m1 N
Ca_09342 Cicer arietinum Ca_09342 N
chr4.CM0128.270.nc Lotus japonicus chr4.CM0128.270.nc N
Ciclev10026374m.g Citrus clementina Ciclev10026374m.g N
Ciclev10029274m.g Citrus clementina Ciclev10029274m.g N
Cla014228 Citrullus lanatus Cla014228 N
Cla020920 Citrullus lanatus Cla020920 N
Cucsa.103050 Cucumis sativus Cucsa.103050 N
Cucsa.352730 Cucumis sativus Cucsa.352730 N
Eucgr.G01261 Eucalyptus grandis Eucgr.G01261 N
Eucgr.G02321 Eucalyptus grandis Eucgr.G02321 N
Eucgr.H02293 Eucalyptus grandis Eucgr.H02293 N
evm.TU.supercontig_6.40 Carica papaya evm.TU.supercontig_6.40 N
e_gw1.19.226.1 Physcomitrella patens e_gw1.19.226.1 N
LBD37 Arabidopsis lyrata fgenesh2_kg.8__2670__AT5G67420.1 N
gene05722-v1.0-hybrid Fragaria vesca gene05722-v1.0-hybrid N
GLYMA05G22120 Glycine max GLYMA05G22120 N
GLYMA17G17540 Glycine max GLYMA17G17540 N
Gorai.007G222000 Gossypium raimondii Gorai.007G222000 N
GRMZM2G017319 Zea mays GRMZM2G017319 N
GRMZM2G044902 Zea mays GRMZM2G044902 N
GRMZM2G177110 Zea mays GRMZM2G177110 N
GSMUA_Achr2G13440_001 Musa acuminata GSMUA_Achr2G13440_001 N
GSMUA_Achr3G18860_001 Musa acuminata GSMUA_Achr3G18860_001 N
GSMUA_Achr3G30130_001 Musa acuminata GSMUA_Achr3G30130_001 N
GSMUA_Achr4G14150_001 Musa acuminata GSMUA_Achr4G14150_001 N
GSMUA_Achr4G32550_001 Musa acuminata GSMUA_Achr4G32550_001 N
GSMUA_Achr6G07770_001 Musa acuminata GSMUA_Achr6G07770_001 N
GSMUA_Achr7G26260_001 Musa acuminata GSMUA_Achr7G26260_001 N
gw1.167.132.1 Physcomitrella patens gw1.167.132.1 N
gw1.41.215.1 Physcomitrella patens gw1.41.215.1 N
LPERR03G19360 Leersia perrieri LPERR03G19360 N
LPERR03G21440 Leersia perrieri LPERR03G21440 N
Lus10011530.g Linum usitatissimum Lus10011530.g N
Lus10019292.g Linum usitatissimum Lus10019292.g N
MDP0000151330 Malus domestica MDP0000151330 N
MDP0000239820 Malus domestica MDP0000239820 N
mgf016064m Mimulus guttatus mgf016064m N
MLOC_11838 Hordeum vulgare MLOC_11838 N
MLOC_51325 Hordeum vulgare MLOC_51325 N
MTR_4g095600 Medicago truncatula MTR_4g095600 N
MTR_5g015880 Medicago truncatula MTR_5g015880 N
OB03G31560 Oryza brachyantha OB03G31560 N
OBART03G22820 Oryza barthii OBART03G22820 N
OBART03G25820 Oryza barthii OBART03G25820 N
OBART07G20600 Oryza barthii OBART07G20600 N
OGLUM03G23580 Oryza glumaepatula OGLUM03G23580 N
OGLUM03G26640 Oryza glumaepatula OGLUM03G26640 N
OGLUM07G20380 Oryza glumaepatula OGLUM07G20380 N
OLONG_015384 Oryza longistaminata OLONG_015384 N
OMERI03G20600 Oryza meridionalis OMERI03G20600 N
OMERI07G17270 Oryza meridionalis OMERI07G17270 N
ONIVA03G24370 Oryza nivara ONIVA03G24370 N
ONIVA03G26970 Oryza nivara ONIVA03G26970 N
ONIVA07G19050 Oryza nivara ONIVA07G19050 N
OPUNC03G21330 Oryza punctata OPUNC03G21330 N
OPUNC03G23160 Oryza punctata OPUNC03G23160 N
OPUNC07G19440 Oryza punctata OPUNC07G19440 N
OPUNC07G19460 Oryza punctata OPUNC07G19460 N
orange1.1g026365m.g Citrus sinensis orange1.1g026365m.g N
ORGLA03G0213800 Oryza glaberrima ORGLA03G0213800 N
ORGLA03G0239300 Oryza glaberrima ORGLA03G0239300 N
ORGLA07G0157700 Oryza glaberrima ORGLA07G0157700 N
ORUFI03G23490 Oryza rufipogon ORUFI03G23490 N
ORUFI03G26700 Oryza rufipogon ORUFI03G26700 N
ORUFI07G21460 Oryza rufipogon ORUFI07G21460 N
OS03G0445700 Oryza sativa OS03G0445700 N
OS03G0609500 Oryza sativa OS03G0609500 N
OS07G0589000 Oryza sativa OS07G0589000 N
Pavir.Ba01055 Panicum virgatum Pavir.Ba01055 N
Pavir.Bb01170 Panicum virgatum Pavir.Bb01170 N
Pavir.Ia03080 Panicum virgatum Pavir.Ia03080 N
Pavir.J16587 Panicum virgatum Pavir.J16587 N
Pavir.J18418 Panicum virgatum Pavir.J18418 N
PGSC0003DMG400024936 Solanum tuberosum PGSC0003DMG400024936 N
PK03075.1 Cannabis sativa PK03075.1 N
PK15647.1 Cannabis sativa PK15647.1 N
PK25954.1 Cannabis sativa PK25954.1 N
POPTR_0001s30280 Populus trichocarpa POPTR_0001s30280 N
POPTR_0007s10010 Populus trichocarpa POPTR_0007s10010 N
SapurV1A.0116s0210 Salix purpurea SapurV1A.0116s0210 N
Sb01g031790 Sorghum bicolor Sb01g031790 N
Sb02g038030 Sorghum bicolor Sb02g038030 N
LBD38 Arabidopsis lyrata scaffold_502015.1 N
SELMODRAFT_105005 Selaginella moellendorffii SELMODRAFT_105005 N
SELMODRAFT_27399 Selaginella moellendorffii SELMODRAFT_27399 N
SELMODRAFT_37566 Selaginella moellendorffii SELMODRAFT_37566 N
SELMODRAFT_37570 Selaginella moellendorffii SELMODRAFT_37570 N
Si031011m.g Setaria italica Si031011m.g N
Si037275m.g Setaria italica Si037275m.g N
Solyc02g092550.2 Solanum lycopersicum Solyc02g092550.2 N
TCM_000766 Theobroma cacao TCM_000766 N
Thhalv10004811m.g Eutrema salsugineum Thhalv10004811m.g N
Thhalv10010666m.g Eutrema salsugineum Thhalv10010666m.g N
Thhalv10026086m.g Eutrema salsugineum Thhalv10026086m.g N
Traes_2AS_942884399 Triticum aestivum Traes_2AS_942884399 N
Traes_2BS_5DF7F4FEE Triticum aestivum Traes_2BS_5DF7F4FEE N
Traes_4AL_7241716B6 Triticum aestivum Traes_4AL_7241716B6 N
Traes_4BL_D44ACD58E Triticum aestivum Traes_4BL_D44ACD58E N
Traes_4BS_3BCDF0612 Triticum aestivum Traes_4BS_3BCDF0612 N
Traes_4DS_9575221BB Triticum aestivum Traes_4DS_9575221BB N
TRIUR3_28321 Triticum urartu TRIUR3_28321 N
VIT_07s0129g00330 Vitis vinifera VIT_07s0129g00330 N