OMERI06G12470 (Oryza meridionalis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 OMERI06G12470 T042526_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
BHLH49
M01052_2.00 		Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN		 PBM
Sullivan et al.(2014)
pTH7309 		0.914 0.961
PK06517.1
M01122_2.00 		Cannabis sativa
NCACGTGC
GCACGTGN		 PBM
Lambert et al.(2019)
pTH10104 		0.914 0.922
gw1.270.82.1
M01758_2.00 		Physcomitrella patens
NCACGTGH
DCACGTGN		 PBM
Weirauch et al.(2014)
pTH8457 		0.902 0.941
BHLH74
M06720_2.00 		Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS		 Dap-seq
OMalley et al.(2016)
bHLH74_col_a 		0.902 0.902
BHLH74
M06721_2.00 		Arabidopsis thaliana
CACGTGAY
RTCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a 		0.902 0.902
BHLH77
M06736_2.00 		Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN		 Dap-seq
OMalley et al.(2016)
bHLH77_col_a 		0.902 0.863
BHLH78
M01713_2.00 		Arabidopsis thaliana
GCACGTGC
GCACGTGC		 PBM
Weirauch et al.(2014)
pTH7666 		0.888 0.902
BPE
M01700_2.00 		Arabidopsis thaliana
NCACGTNNN
NNNACGTGN		 PBM
Weirauch et al.(2014)
pTH7290 		0.875 0.843
BPE
M06726_2.00 		Arabidopsis thaliana
NNNNNNNNCACGTGNNNNNWB
VWNNNNNCACGTGNNNNNNNN		 Dap-seq
OMalley et al.(2016)
bHLH31_col 		0.875 0.843
AT2G18300
M01702_2.00 		Arabidopsis thaliana
NBCACGTGCNNN
NNNGCACGTGVN		 PBM
Weirauch et al.(2014)
pTH7289 		0.864 0.804
BEE2
M01708_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8094 		0.864 0.804
AT2G18300
M06729_2.00 		Arabidopsis thaliana
ACTGGT
ACCAGT		 Dap-seq
OMalley et al.(2016)
bHLH64_col_a 		0.864 0.804
PK05923.1
M01121_2.00 		Cannabis sativa
NNNNNNN
NNNNNNN		 PBM
Lambert et al.(2019)
pTH11368 		0.842 0.765
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OMERI06G12470.1 bHLH 274 324
OMERI06G12470.2 bHLH 274 324

Links

Other bHLH family TFs
Other Oryza meridionalis TFs

902 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Al_scaffold_0003_2798 Arabidopsis lyrata Al_scaffold_0003_2798 I
SNZ Arabidopsis thaliana AT2G39250 I
SMZ Arabidopsis thaliana AT3G54990 D
TOE2 Arabidopsis thaliana AT5G60120 D
Bo6g068410 Brassica oleracea Bo6g068410 I
Bo8g087280 Brassica oleracea Bo8g087280 I
Bo9g141100 Brassica oleracea Bo9g141100 I
Bostr.0697s0115 Boechera stricta Bostr.0697s0115 I
Bostr.23794s0149 Boechera stricta Bostr.23794s0149 I
Bra002510 Brassica rapa Bra002510 I
Bra007123 Brassica rapa Bra007123 I
Bra020262 Brassica rapa Bra020262 I
Cagra.0716s0040 Capsella grandiflora Cagra.0716s0040 I
Cagra.1317s0005 Capsella grandiflora Cagra.1317s0005 I
Cagra.1742s0021 Capsella grandiflora Cagra.1742s0021 I
Carubv10018526m.g Capsella rubella Carubv10018526m.g I
Carubv10023614m.g Capsella rubella Carubv10023614m.g I
Carubv10026292m.g Capsella rubella Carubv10026292m.g I
Ca_26761 Cicer arietinum Ca_26761 I
Cla020387 Citrullus lanatus Cla020387 I
Cucsa.165940 Cucumis sativus Cucsa.165940 I
Eucgr.G02793 Eucalyptus grandis Eucgr.G02793 I
SNZ Arabidopsis lyrata fgenesh1_pm.C_scaffold_4001673 I
SMZ Arabidopsis lyrata fgenesh2_kg.5__1910__AT3G54990.1 I
gene23316-v1.0-hybrid Fragaria vesca gene23316-v1.0-hybrid I
GLYMA02G09600 Glycine max GLYMA02G09600 I
GLYMA10G22390 Glycine max GLYMA10G22390 I
Gorai.003G139800 Gossypium raimondii Gorai.003G139800 I
Gorai.011G241700 Gossypium raimondii Gorai.011G241700 I
GRMZM2G416701 Zea mays GRMZM2G416701 I
Lus10040365.g Linum usitatissimum Lus10040365.g I
MDP0000130802 Malus domestica MDP0000130802 I
MDP0000281079 Malus domestica MDP0000281079 I
MDP0000285955 Malus domestica MDP0000285955 I
MTR_1g049140 Medicago truncatula MTR_1g049140 I
PGSC0003DMG400011046 Solanum tuberosum PGSC0003DMG400011046 I
PGSC0003DMG400012038 Solanum tuberosum PGSC0003DMG400012038 I
PK16652.1 Cannabis sativa PK16652.1 I
Pm018608 Prunus mume Pm018608 I
PRUPE_ppa018704mg Prunus persica PRUPE_ppa018704mg I
Sb10g001490 Sorghum bicolor Sb10g001490 I
Thhalv10010513m.g Eutrema salsugineum Thhalv10010513m.g I
Thhalv10013367m.g Eutrema salsugineum Thhalv10013367m.g I