Cagra.3706s0004 (Capsella grandiflora)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Cagra.3706s0004 T049297_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
OS08G0506700
M01755_2.00 		Oryza sativa
NCCACTTGN
NCAAGTGGN		 PBM
Weirauch et al.(2014)
pTH8547 		0.866 0.796
BHLH80
M06722_2.00 		Arabidopsis thaliana
DNCMACTTGCH
DGCAAGTKGNH		 Dap-seq
OMalley et al.(2016)
bHLH80_col_a 		0.845 0.735
BHLH80
M06723_2.00 		Arabidopsis thaliana
DKCMACTTGCA
TGCAAGTKGMH		 Dap-seq
OMalley et al.(2016)
bHLH80_colamp_a 		0.845 0.735
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.3706s0004.1.p bHLH 242 290

Links

Other bHLH family TFs
Other Capsella grandiflora TFs

184 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28211.m000132 Ricinus communis 28211.m000132 I
29889.m003388 Ricinus communis 29889.m003388 I
29983.m003158 Ricinus communis 29983.m003158 I
30076.m004574 Ricinus communis 30076.m004574 I
30170.m014245 Ricinus communis 30170.m014245 I
AMTR_s00019p00235390 Amborella trichopoda AMTR_s00019p00235390 I
AMTR_s00022p00106940 Amborella trichopoda AMTR_s00022p00106940 I
AMTR_s00045p00076020 Amborella trichopoda AMTR_s00045p00076020 I
AMTR_s00062p00211520 Amborella trichopoda AMTR_s00062p00211520 I
AMTR_s00106p00142470 Amborella trichopoda AMTR_s00106p00142470 I
Aquca_007_00971 Aquilegia coerulea Aquca_007_00971 I
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I
Aquca_033_00055 Aquilegia coerulea Aquca_033_00055 I
SPL14 Arabidopsis thaliana AT1G20980 D
SPL4 Arabidopsis thaliana AT1G53160 D
AT1G76580 Arabidopsis thaliana AT1G76580 D
SPL3 Arabidopsis thaliana AT2G33810 D
SPL1 Arabidopsis thaliana AT2G47070 D
SPL5 Arabidopsis thaliana AT3G15270 D
SPL12 Arabidopsis thaliana AT3G60030 D
BGIOSGA016888 Oryza indica BGIOSGA016888 I
SPL15 Oryza indica BGIOSGA028994 I
Bo2g091010 Brassica oleracea Bo2g091010 I
Bo3g027460 Brassica oleracea Bo3g027460 I
Bo4g005730 Brassica oleracea Bo4g005730 I
Bo4g042390 Brassica oleracea Bo4g042390 I
Bo5g030930 Brassica oleracea Bo5g030930 I
Bo5g127310 Brassica oleracea Bo5g127310 I
Bo6g029290 Brassica oleracea Bo6g029290 I
Bo6g031220 Brassica oleracea Bo6g031220 I
Bo6g120690 Brassica oleracea Bo6g120690 I
Bostr.0124s0106 Boechera stricta Bostr.0124s0106 I
Bostr.20129s0096 Boechera stricta Bostr.20129s0096 I
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I
Bostr.25993s0059 Boechera stricta Bostr.25993s0059 I
Bostr.28625s0189 Boechera stricta Bostr.28625s0189 I
Bostr.29344s0010 Boechera stricta Bostr.29344s0010 I
Bostr.7128s0689 Boechera stricta Bostr.7128s0689 I
Bra005470 Brassica rapa Bra005470 I
Bra015732 Brassica rapa Bra015732 I
Bra021880 Brassica rapa Bra021880 I
Bra022954 Brassica rapa Bra022954 I
Bra025863 Brassica rapa Bra025863 I
Bra027265 Brassica rapa Bra027265 I
Bra038101 Brassica rapa Bra038101 I
Bra039656 Brassica rapa Bra039656 I
Bra041037 Brassica rapa Bra041037 I
BRADI1G02760 Brachypodium distachyon BRADI1G02760 I
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I
BRADI3G40240 Brachypodium distachyon BRADI3G40240 I
Cagra.0007s0069 Capsella grandiflora Cagra.0007s0069 I
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I
Cagra.1472s0017 Capsella grandiflora Cagra.1472s0017 I
Cagra.16630s0008 Capsella grandiflora Cagra.16630s0008 I
Cagra.3527s0045 Capsella grandiflora Cagra.3527s0045 I
Carubv10008169m.g Capsella rubella Carubv10008169m.g I
Carubv10010422m.g Capsella rubella Carubv10010422m.g I
Carubv10012577m.g Capsella rubella Carubv10012577m.g I
Carubv10014636m.g Capsella rubella Carubv10014636m.g I
Carubv10016658m.g Capsella rubella Carubv10016658m.g I
Carubv10024311m.g Capsella rubella Carubv10024311m.g I
cassava29736.valid.m1 Manihot esculenta cassava29736.valid.m1 I
cassava31252.valid.m1 Manihot esculenta cassava31252.valid.m1 I
cassava36085.valid.m1 Manihot esculenta cassava36085.valid.m1 I
cassava37839.valid.m1 Manihot esculenta cassava37839.valid.m1 I
cassava7404.valid.m1 Manihot esculenta cassava7404.valid.m1 I
Ca_00320 Cicer arietinum Ca_00320 I
Ca_01036 Cicer arietinum Ca_01036 I
Ca_03548 Cicer arietinum Ca_03548 I
Ca_16243 Cicer arietinum Ca_16243 I
Ca_18591 Cicer arietinum Ca_18591 I
chr1.CM0122.330.nc Lotus japonicus chr1.CM0122.330.nc I
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I
chr5.CM0158.110.nc Lotus japonicus chr5.CM0158.110.nc I
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I
Ciclev10000100m.g Citrus clementina Ciclev10000100m.g I
Ciclev10004227m.g Citrus clementina Ciclev10004227m.g I
Ciclev10009879m.g Citrus clementina Ciclev10009879m.g I
Ciclev10016841m.g Citrus clementina Ciclev10016841m.g I
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I
Ciclev10018697m.g Citrus clementina Ciclev10018697m.g I
Cla002263 Citrullus lanatus Cla002263 I
Cla009788 Citrullus lanatus Cla009788 I
Cla017596 Citrullus lanatus Cla017596 I
Cla020006 Citrullus lanatus Cla020006 I
Cla023735 Citrullus lanatus Cla023735 I
Cucsa.126820 Cucumis sativus Cucsa.126820 I
Cucsa.192470 Cucumis sativus Cucsa.192470 I
Cucsa.196000 Cucumis sativus Cucsa.196000 I
estExt_fgenesh1_pg.C_1940032 Physcomitrella patens estExt_fgenesh1_pg.C_1940032 I
estExt_fgenesh1_pg.C_1940033 Physcomitrella patens estExt_fgenesh1_pg.C_1940033 D
Eucgr.A01019 Eucalyptus grandis Eucgr.A01019 I
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I
Eucgr.F01828 Eucalyptus grandis Eucgr.F01828 I
Eucgr.F03303 Eucalyptus grandis Eucgr.F03303 I
Eucgr.H04114 Eucalyptus grandis Eucgr.H04114 I
Eucgr.K01046 Eucalyptus grandis Eucgr.K01046 I
evm.TU.supercontig_146.32 Carica papaya evm.TU.supercontig_146.32 I
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I
evm.TU.supercontig_36.105 Carica papaya evm.TU.supercontig_36.105 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
F775_00761 Aegilops tauschii F775_00761 I
F775_27970 Aegilops tauschii F775_27970 I
F775_31139 Aegilops tauschii F775_31139 I
fgenesh1_pg.scaffold_50000083 Physcomitrella patens fgenesh1_pg.scaffold_50000083 I
SPL14 Arabidopsis lyrata fgenesh2_kg.1__2292__AT1G20980.1 I
SPL4 Arabidopsis lyrata fgenesh2_kg.1__4389__AT1G53160.2 I
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I
SPL1 Arabidopsis lyrata fgenesh2_kg.4__2943__AT2G47070.1 I
gene00196-v1.0-hybrid Fragaria vesca gene00196-v1.0-hybrid I
gene22888-v1.0-hybrid Fragaria vesca gene22888-v1.0-hybrid I
gene22889-v1.0-hybrid Fragaria vesca gene22889-v1.0-hybrid I
gene29149-v1.0-hybrid Fragaria vesca gene29149-v1.0-hybrid I
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I
GLYMA02G01160 Glycine max GLYMA02G01160 I
GLYMA06G36140 Glycine max GLYMA06G36140 I
GLYMA07G19770 Glycine max GLYMA07G19770 I
GLYMA07G36180 Glycine max GLYMA07G36180 I
GLYMA09G09790 Glycine max GLYMA09G09790 I
GLYMA10G01211 Glycine max GLYMA10G01211 I
GLYMA12G27330 Glycine max GLYMA12G27330 I
GLYMA13G31090 Glycine max GLYMA13G31090 I
GLYMA15G08270 Glycine max GLYMA15G08270 I
GLYMA15G21860 Glycine max GLYMA15G21860 I
GLYMA17G04400 Glycine max GLYMA17G04400 I
GLYMA18G36960 Glycine max GLYMA18G36960 I
GLYMA20G00900 Glycine max GLYMA20G00900 I
Gorai.001G057700 Gossypium raimondii Gorai.001G057700 I
Gorai.002G112200 Gossypium raimondii Gorai.002G112200 I
Gorai.002G156700 Gossypium raimondii Gorai.002G156700 I
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I
Gorai.005G071400 Gossypium raimondii Gorai.005G071400 I
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I
Gorai.008G135700 Gossypium raimondii Gorai.008G135700 I
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I
Gorai.013G169800 Gossypium raimondii Gorai.013G169800 I
GRMZM2G098557 Zea mays GRMZM2G098557 I
GRMZM2G138421 Zea mays GRMZM2G138421 I
GRMZM2G156756 Zea mays GRMZM2G156756 I
GRMZM2G169270 Zea mays GRMZM2G169270 I
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I
GSMUA_Achr2G01820_001 Musa acuminata GSMUA_Achr2G01820_001 I
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I
GSMUA_Achr3G24520_001 Musa acuminata GSMUA_Achr3G24520_001 I
GSMUA_Achr4G16050_001 Musa acuminata GSMUA_Achr4G16050_001 I
GSMUA_Achr5G22250_001 Musa acuminata GSMUA_Achr5G22250_001 I
GSMUA_Achr5G25090_001 Musa acuminata GSMUA_Achr5G25090_001 I
GSMUA_Achr5G27280_001 Musa acuminata GSMUA_Achr5G27280_001 I
GSMUA_Achr7G08750_001 Musa acuminata GSMUA_Achr7G08750_001 I
GSMUA_Achr7G20620_001 Musa acuminata GSMUA_Achr7G20620_001 I
GSMUA_Achr8G25550_001 Musa acuminata GSMUA_Achr8G25550_001 I
GSMUA_Achr9G27660_001 Musa acuminata GSMUA_Achr9G27660_001 I
gw1.313.30.1 Physcomitrella patens gw1.313.30.1 I
gw1.47.180.1 Physcomitrella patens gw1.47.180.1 I
LjSGA_121222.1 Lotus japonicus LjSGA_121222.1 I
LjT35D18.50.nc Lotus japonicus LjT35D18.50.nc I
LPERR03G34030 Leersia perrieri LPERR03G34030 I
LPERR04G17030 Leersia perrieri LPERR04G17030 I
LPERR08G17180 Leersia perrieri LPERR08G17180 I
Lus10004523.g Linum usitatissimum Lus10004523.g I
Lus10005548.g Linum usitatissimum Lus10005548.g I
Lus10010071.g Linum usitatissimum Lus10010071.g I
Lus10018610.g Linum usitatissimum Lus10018610.g I
Lus10039846.g Linum usitatissimum Lus10039846.g I
MDP0000149339 Malus domestica MDP0000149339 I
MDP0000156994 Malus domestica MDP0000156994 I
MDP0000158607 Malus domestica MDP0000158607 I
MDP0000180408 Malus domestica MDP0000180408 I
MDP0000180409 Malus domestica MDP0000180409 I
MDP0000262141 Malus domestica MDP0000262141 I
MDP0000861601 Malus domestica MDP0000861601 I
MDP0000919693 Malus domestica MDP0000919693 I
MDP0000919694 Malus domestica MDP0000919694 I
mgf001202m Mimulus guttatus mgf001202m I
mgf001295m Mimulus guttatus mgf001295m I
mgf009459m Mimulus guttatus mgf009459m I
mgf011616m Mimulus guttatus mgf011616m I
mgf016414m Mimulus guttatus mgf016414m I
mgf025134m Mimulus guttatus mgf025134m I
MLOC_4792 Hordeum vulgare MLOC_4792 I
MLOC_4830 Hordeum vulgare MLOC_4830 I
MLOC_6525 Hordeum vulgare MLOC_6525 I
MTR_1g035010 Medicago truncatula MTR_1g035010 I
MTR_1g086250 Medicago truncatula MTR_1g086250 I
MTR_2g046550 Medicago truncatula MTR_2g046550 I
MTR_4g088555 Medicago truncatula MTR_4g088555 I
MTR_7g110320 Medicago truncatula MTR_7g110320 I
MTR_8g463140 Medicago truncatula MTR_8g463140 I
OB03G47050 Oryza brachyantha OB03G47050 I
OB04G27960 Oryza brachyantha OB04G27960 I
OB08G27190 Oryza brachyantha OB08G27190 I
OBART03G39900 Oryza barthii OBART03G39900 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART08G20320 Oryza barthii OBART08G20320 I
OGLUM03G39810 Oryza glumaepatula OGLUM03G39810 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM08G21580 Oryza glumaepatula OGLUM08G21580 I
OLONG_014873 Oryza longistaminata OLONG_014873 I
OMERI02G02300 Oryza meridionalis OMERI02G02300 I
OMERI03G36740 Oryza meridionalis OMERI03G36740 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
ONIVA03G41820 Oryza nivara ONIVA03G41820 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA08G22940 Oryza nivara ONIVA08G22940 I
OPUNC03G37130 Oryza punctata OPUNC03G37130 I
OPUNC03G37170 Oryza punctata OPUNC03G37170 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC08G18470 Oryza punctata OPUNC08G18470 I
orange1.1g001317m.g Citrus sinensis orange1.1g001317m.g I
orange1.1g001971m.g Citrus sinensis orange1.1g001971m.g I
orange1.1g029650m.g Citrus sinensis orange1.1g029650m.g I
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I
orange1.1g032937m.g Citrus sinensis orange1.1g032937m.g I
ORGLA03G0367800 Oryza glaberrima ORGLA03G0367800 I
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORGLA08G0179900 Oryza glaberrima ORGLA08G0179900 I
ORUFI03G41710 Oryza rufipogon ORUFI03G41710 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI08G22780 Oryza rufipogon ORUFI08G22780 I
SPL6 Oryza sativa OS03G0833300 I
SPL7 Oryza sativa OS04G0551500 I
Pavir.Fa00457 Panicum virgatum Pavir.Fa00457 I
Pavir.Fb01917 Panicum virgatum Pavir.Fb01917 I
Pavir.Ia00235 Panicum virgatum Pavir.Ia00235 I
Pavir.J01500 Panicum virgatum Pavir.J01500 I
PDK_20s1709081g002 Phoenix dactylifera PDK_20s1709081g002 I
PGSC0003DMG400005196 Solanum tuberosum PGSC0003DMG400005196 I
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I
PGSC0003DMG400027151 Solanum tuberosum PGSC0003DMG400027151 I
PGSC0003DMG400032817 Solanum tuberosum PGSC0003DMG400032817 I
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I
PK06791.1 Cannabis sativa PK06791.1 D
PK11310.1 Cannabis sativa PK11310.1 I
PK22320.1 Cannabis sativa PK22320.1 D
PK25661.1 Cannabis sativa PK25661.1 I
PK26639.1 Cannabis sativa PK26639.1 I
Pm008474 Prunus mume Pm008474 I
Pm008475 Prunus mume Pm008475 I
Pm011381 Prunus mume Pm011381 I
Pm014154 Prunus mume Pm014154 I
Pm017778 Prunus mume Pm017778 I
Pm022881 Prunus mume Pm022881 I
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I
POPTR_0001s40870 Populus trichocarpa POPTR_0001s40870 I
POPTR_0002s00440 Populus trichocarpa POPTR_0002s00440 D
POPTR_0002s18970 Populus trichocarpa POPTR_0002s18970 I
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I
POPTR_0005s28010 Populus trichocarpa POPTR_0005s28010 I
POPTR_0007s01030 Populus trichocarpa POPTR_0007s01030 I
POPTR_0008s09810 Populus trichocarpa POPTR_0008s09810 I
POPTR_0010s16370 Populus trichocarpa POPTR_0010s16370 I
POPTR_0011s11770 Populus trichocarpa POPTR_0011s11770 I
POPTR_0014s10960 Populus trichocarpa POPTR_0014s10960 I
PRUPE_ppa000682mg Prunus persica PRUPE_ppa000682mg D
PRUPE_ppa000690mg Prunus persica PRUPE_ppa000690mg I
PRUPE_ppa000792mg Prunus persica PRUPE_ppa000792mg I
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I
PRUPE_ppa023657mg Prunus persica PRUPE_ppa023657mg I
PRUPE_ppa024285mg Prunus persica PRUPE_ppa024285mg I
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I
SapurV1A.0014s0380 Salix purpurea SapurV1A.0014s0380 I
SapurV1A.0016s0070 Salix purpurea SapurV1A.0016s0070 I
SapurV1A.0072s0370 Salix purpurea SapurV1A.0072s0370 I
SapurV1A.0118s0110 Salix purpurea SapurV1A.0118s0110 I
SapurV1A.0156s0200 Salix purpurea SapurV1A.0156s0200 I
SapurV1A.0176s0510 Salix purpurea SapurV1A.0176s0510 I
SapurV1A.0294s0270 Salix purpurea SapurV1A.0294s0270 I
SapurV1A.0554s0130 Salix purpurea SapurV1A.0554s0130 I
SapurV1A.1264s0060 Salix purpurea SapurV1A.1264s0060 I
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I
SapurV1A.3749s0010 Salix purpurea SapurV1A.3749s0010 I
Sb01g002530 Sorghum bicolor Sb01g002530 I
Sb06g024630 Sorghum bicolor Sb06g024630 I
Sb07g027420 Sorghum bicolor Sb07g027420 I
scaffold_202615.1 Arabidopsis lyrata scaffold_202615.1 I
SPL12 Arabidopsis lyrata scaffold_503227.1 I
SELMODRAFT_28625 Selaginella moellendorffii SELMODRAFT_28625 I
SELMODRAFT_28626 Selaginella moellendorffii SELMODRAFT_28626 I
SELMODRAFT_437670 Selaginella moellendorffii SELMODRAFT_437670 I
SELMODRAFT_445524 Selaginella moellendorffii SELMODRAFT_445524 I
Si013151m.g Setaria italica Si013151m.g I
Si032170m.g Setaria italica Si032170m.g I
Si034095m.g Setaria italica Si034095m.g I
Solyc01g068100.2 Solanum lycopersicum Solyc01g068100.2 I
Solyc02g077920.2 Solanum lycopersicum Solyc02g077920.2 I
Solyc05g053240.2 Solanum lycopersicum Solyc05g053240.2 I
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I
TCM_004922 Theobroma cacao TCM_004922 I
TCM_008150 Theobroma cacao TCM_008150 I
TCM_021482 Theobroma cacao TCM_021482 I
TCM_029832 Theobroma cacao TCM_029832 I
TCM_031595 Theobroma cacao TCM_031595 I
TCM_034803 Theobroma cacao TCM_034803 I
Thhalv10001295m.g Eutrema salsugineum Thhalv10001295m.g I
Thhalv10006656m.g Eutrema salsugineum Thhalv10006656m.g I
Thhalv10011728m.g Eutrema salsugineum Thhalv10011728m.g I
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I
Thhalv10018054m.g Eutrema salsugineum Thhalv10018054m.g I
Thhalv10018065m.g Eutrema salsugineum Thhalv10018065m.g I
Thhalv10021617m.g Eutrema salsugineum Thhalv10021617m.g I
Traes_4AL_5062917C4 Triticum aestivum Traes_4AL_5062917C4 I
Traes_5BL_3503725F1 Triticum aestivum Traes_5BL_3503725F1 I
Traes_5DL_3CDCC5DFF Triticum aestivum Traes_5DL_3CDCC5DFF I
Traes_7AS_0F019FB93 Triticum aestivum Traes_7AS_0F019FB93 I
Traes_7DS_AB399594E Triticum aestivum Traes_7DS_AB399594E I
TRIUR3_10193 Triticum urartu TRIUR3_10193 I
TRIUR3_31982 Triticum urartu TRIUR3_31982 I
TRIUR3_33729 Triticum urartu TRIUR3_33729 I
VIT_05s0020g00700 Vitis vinifera VIT_05s0020g00700 I
VIT_07s0005g02260 Vitis vinifera VIT_07s0005g02260 I
VIT_12s0028g03350 Vitis vinifera VIT_12s0028g03350 I
VIT_18s0122g00380 Vitis vinifera VIT_18s0122g00380 I
VIT_19s0014g02350 Vitis vinifera VIT_19s0014g02350 I