MDP0000439540 (Malus domestica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 MDP0000439540 T050468_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.914 1.000
OS01G0235700
M09894_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BHLH66_01 		0.843 0.490
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.843 0.531
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.843 0.531
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.843 0.531
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.843 0.531
BIM2
M01701_2.00 		Arabidopsis thaliana
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8089 		0.843 0.490
BIM2
M06727_2.00 		Arabidopsis thaliana
CACGTGHBNNNNNNNNNNN
NNNNNNNNNNNVDCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_colamp 		0.843 0.490
BIM2
M06728_2.00 		Arabidopsis thaliana
CACGTGMBNNNCVYV
BRBGNNNVKCACGTG		 Dap-seq
OMalley et al.(2016)
BIM2_col_v3b 		0.843 0.490
PIF3
M00854_2.00 		Arabidopsis thaliana
CACGTGSNN
NNSCACGTG		 PBM
Franco-Zorrilla et al.(2014)
PIF3 		0.840 0.673
PIF3
M00722_2.00 		Arabidopsis thaliana
NCACRTN
NAYGTGN		 PBM
Chang et al.(2013)
pTH8200 		0.840 0.673
PK05451.1
M01120_2.00 		Cannabis sativa
YCACGTGM
KCACGTGR		 PBM
Lambert et al.(2019)
pTH10100 		0.840 0.673
PIF3
M08045_2.00 		Arabidopsis thaliana
HCACGTGGVH
DBCCACGTGD		 ChIP-seq
Mathelier et al.(2014)
MA0560.1 		0.840 0.673
PIF3
M09780_2.00 		Arabidopsis thaliana
BDRRRVCACGTGRVSHCD
HGDSBYCACGTGBYYYHV		 Transfac
Matys et al.(2006)
P$PIF3_01 		0.840 0.673
PIF3
M09781_2.00 		Arabidopsis thaliana
DDDVCCACGTGGVMVNB
VNBKBCCACGTGGBHHH		 Transfac
Matys et al.(2006)
P$PIF3_02 		0.840 0.673
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
MDP0000439540 bHLH 269 317

Links

Other bHLH family TFs
Other Malus domestica TFs

422 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I
Aan_R005866 Calypte anna Aan_R005866 I
Aan_R007025 Calypte anna Aan_R007025 I
Afo_R003680 Aptenodytes forsteri Afo_R003680 I
Afo_R008930 Aptenodytes forsteri Afo_R008930 I
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I
Brh_R006709 Buceros rhinoceros Brh_R006709 I
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I
LIN28B Anolis carolinensis ENSACAG00000003957 I
ENSACAG00000017764 Anolis carolinensis ENSACAG00000017764 I
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I
LIN28B Bos taurus ENSBTAG00000043973 I
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I
LIN28B Canis familiaris ENSCAFG00000003598 I
LIN28A Canis familiaris ENSCAFG00000012488 I
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I
LIN28A Choloepus hoffmanni ENSCHOG00000002073 I
LIN28B Callithrix jacchus ENSCJAG00000001671 I
LIN28A Callithrix jacchus ENSCJAG00000009796 I
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I
LIN28B Cavia porcellus ENSCPOG00000006178 I
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I
LIN28A Danio rerio ENSDARG00000004328 I
lin28a Danio rerio ENSDARG00000016999 I
lin28b Danio rerio ENSDARG00000052511 I
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I
LIN28A Equus caballus ENSECAG00000020267 I
LIN28B Equus caballus ENSECAG00000020994 I
LIN28B Erinaceus europaeus ENSEEUG00000003632 I
LIN28A Erinaceus europaeus ENSEEUG00000012085 I
LIN28B Echinops telfairi ENSETEG00000015340 I
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I
LIN28B Felis catus ENSFCAG00000005058 I
LIN28A Felis catus ENSFCAG00000012810 I
LIN28A Homo sapiens ENSG00000131914 I
LIN28B Homo sapiens ENSG00000187772 D
lin28a Gasterosteus aculeatus ENSGACG00000007826 I
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I
LIN28B Gallus gallus ENSGALG00000026761 I
LIN28B Gorilla gorilla ENSGGOG00000015437 I
LIN28A Gorilla gorilla ENSGGOG00000024918 I
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I
LIN28A Loxodonta africana ENSLAFG00000017525 I
LIN28B Loxodonta africana ENSLAFG00000017788 I
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I
LIN28A Meleagris gallopavo ENSMGAG00000009456 I
LIN28B Meleagris gallopavo ENSMGAG00000013531 I
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I
LIN28B Myotis lucifugus ENSMLUG00000006883 I
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I
LIN28B Macaca mulatta ENSMMUG00000014470 I
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I
LIN28A Monodelphis domestica ENSMODG00000014236 I
LIN28B Monodelphis domestica ENSMODG00000018035 I
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I
Lin28a Mus musculus ENSMUSG00000050966 I
Lin28b Mus musculus ENSMUSG00000063804 I
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I
LIN28A Otolemur garnettii ENSOGAG00000003971 I
LIN28B Otolemur garnettii ENSOGAG00000011042 I
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I
LIN28A Ochotona princeps ENSOPRG00000001591 I
LIN28B Ochotona princeps ENSOPRG00000006333 I
LIN28B Oryzias latipes ENSORLG00000012891 I
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I
ENSP00000254231 Macaca fascicularis ENSP00000254231 I
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I
LIN28A Pan troglodytes ENSPTRG00000000384 I
LIN28B Pan troglodytes ENSPTRG00000018453 I
LIN28B Pteropus vampyrus ENSPVAG00000008797 I
LIN28A Pteropus vampyrus ENSPVAG00000017267 I
Lin28b Rattus norvegicus ENSRNOG00000025938 I
Lin28a Rattus norvegicus ENSRNOG00000060320 I
LIN28B Sorex araneus ENSSARG00000008374 I
ENSSHAG00000012434 Sarcophilus harrisii ENSSHAG00000012434 I
LIN28A Sus scrofa ENSSSCG00000003557 I
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I
ENSTGUG00000001037 Taeniopygia guttata ENSTGUG00000001037 I
LIN28B Taeniopygia guttata ENSTGUG00000012225 I
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I
LIN28B Takifugu rubripes ENSTRUG00000008428 I
lin28a Takifugu rubripes ENSTRUG00000009454 I
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I
LIN28A Tursiops truncatus ENSTTRG00000005678 I
LIN28B Tursiops truncatus ENSTTRG00000014919 I
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I
Gfo_R011576 Geospiza fortis Gfo_R011576 I
Gfo_R012200 Geospiza fortis Gfo_R012200 I
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I
Ogr09706 Ophisaurus gracilis Ogr09706 I
Ogr14286 Ophisaurus gracilis Ogr14286 I
Pvit_09294 Pogona vitticeps Pvit_09294 I
lin28b Xenopus tropicalis XB-GENE-1218969 I
lin28b.S Xenopus laevis XB-GENE-1218973 I
lin28a Xenopus tropicalis XB-GENE-491384 I
lin28a.S Xenopus laevis XB-GENE-866059 I
yakG040859 Bos grunniens yakG040859 I