Carubv10023434m.g (Capsella rubella)
bZIP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00170 (bZIP_1) IPR011616 Carubv10023434m.g T071595_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GBF3
M01779_2.00 		Arabidopsis thaliana
NBMCASSTVD
HBASSTGKVN		 PBM
Weirauch et al.(2014)
pTH7328 		0.883 1.000
GBF3
M06770_2.00 		Arabidopsis thaliana
DNHDNHSACGTGKMD
HKMCACGTSDNHDNH		 Dap-seq
OMalley et al.(2016)
GBF3_colamp 		0.883 1.000
GBF3
M06771_2.00 		Arabidopsis thaliana
DDWKVYSACGTGGCA
TGCCACGTSRBMWHH		 Dap-seq
OMalley et al.(2016)
GBF3_col 		0.883 1.000
PK09653.1
M01156_2.00 		Cannabis sativa
NNMCASVNNN
NNNBSTGKNN		 PBM
Lambert et al.(2019)
pTH10114 		0.868 0.781
Q40645_ORYSA
M10050_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$OSBZ8_Q6 		0.854 0.750
Q41109_PHAVU
M10078_2.00 		Phaseolus vulgaris Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$ROM_Q2 		0.854 0.781
GBF2
M01781_2.00 		Arabidopsis thaliana
BMCASSNNN
NNNSSTGKV		 PBM
Weirauch et al.(2014)
pTH7258 		0.834 0.734
TAF1_TOBAC
M10079_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_01 		0.820 0.750
TAF1_TOBAC
M10080_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$TAF1_Q2 		0.820 0.750
CPRF1_PETCR
M10066_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_01 		0.807 0.703
CPRF1_PETCR
M10067_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF1_Q2 		0.807 0.703
CPRF1_PETCR
M10068_2.00 		Petroselinum crispum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$CPRF_Q2 		0.807 0.703
GBF1
M01783_2.00 		Arabidopsis thaliana
HBACGTGKMN
NKMCACGTVD		 PBM
Weirauch et al.(2014)
pTH7259 		0.800 0.641
GBF1
M09913_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_01 		0.800 0.641
GBF1
M09914_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1F_Q2 		0.800 0.641
GBF1
M09915_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2_01 		0.800 0.641
GBF1
M09916_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$GBF1_Q2 		0.800 0.641
For this family, TFs with SR scores > 0.782 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023434m bZIP 253 316
Carubv10023733m bZIP 230 293

Links

Other bZIP family TFs
Other Capsella rubella TFs

179 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29983.m003158 Ricinus communis 29983.m003158 I
30174.m008805 Ricinus communis 30174.m008805 I
Aquca_029_00063 Aquilegia coerulea Aquca_029_00063 I
Aquca_035_00165 Aquilegia coerulea Aquca_035_00165 I
Aquca_036_00099 Aquilegia coerulea Aquca_036_00099 N
SPL3 Arabidopsis thaliana AT2G33810 D
BGIOSGA016888 Oryza indica BGIOSGA016888 I
BGIOSGA024253 Oryza indica BGIOSGA024253 I
Bo2g062840 Brassica oleracea Bo2g062840 I
Bo3g027460 Brassica oleracea Bo3g027460 I
Bo4g042390 Brassica oleracea Bo4g042390 I
Bostr.10273s0456 Boechera stricta Bostr.10273s0456 N
Bostr.23794s0714 Boechera stricta Bostr.23794s0714 I
Bra005470 Brassica rapa Bra005470 I
Bra021880 Brassica rapa Bra021880 I
Bra038324 Brassica rapa Bra038324 I
BRADI1G26720 Brachypodium distachyon BRADI1G26720 I
Cagra.1195s0023 Capsella grandiflora Cagra.1195s0023 I
Carubv10024311m.g Capsella rubella Carubv10024311m.g I
cassava17741.valid.m1 Manihot esculenta cassava17741.valid.m1 I
cassava46941.m1 Manihot esculenta cassava46941.m1 I
Ca_16243 Cicer arietinum Ca_16243 I
Ca_24655 Cicer arietinum Ca_24655 I
chr3.CM0160.520.nc Lotus japonicus chr3.CM0160.520.nc I
chr3.CM0282.980.nc Lotus japonicus chr3.CM0282.980.nc I
chr6.CM0114.270.nc Lotus japonicus chr6.CM0114.270.nc I
Ciclev10017104m.g Citrus clementina Ciclev10017104m.g I
Ciclev10031270m.g Citrus clementina Ciclev10031270m.g I
Cla002263 Citrullus lanatus Cla002263 I
Cla009788 Citrullus lanatus Cla009788 I
Cla023735 Citrullus lanatus Cla023735 I
Cucsa.046310 Cucumis sativus Cucsa.046310 N
Cucsa.196000 Cucumis sativus Cucsa.196000 I
Cucsa.272530 Cucumis sativus Cucsa.272530 I
Eucgr.E03260 Eucalyptus grandis Eucgr.E03260 I
evm.TU.supercontig_149.2 Carica papaya evm.TU.supercontig_149.2 I
evm.TU.supercontig_27.40 Carica papaya evm.TU.supercontig_27.40 I
evm.TU.supercontig_80.88 Carica papaya evm.TU.supercontig_80.88 I
SPL3 Arabidopsis lyrata fgenesh2_kg.4__1394__AT2G33810.1 I
gene17738-v1.0-hybrid Fragaria vesca gene17738-v1.0-hybrid I
gene29726-v1.0-hybrid Fragaria vesca gene29726-v1.0-hybrid I
GLYMA01G08056 Glycine max GLYMA01G08056 I
GLYMA02G13371 Glycine max GLYMA02G13371 I
GLYMA06G36140 Glycine max GLYMA06G36140 I
GLYMA11G16556 Glycine max GLYMA11G16556 I
GLYMA12G27330 Glycine max GLYMA12G27330 I
GLYMA13G31090 Glycine max GLYMA13G31090 I
GLYMA15G08270 Glycine max GLYMA15G08270 I
Gorai.004G047200 Gossypium raimondii Gorai.004G047200 I
Gorai.007G087900 Gossypium raimondii Gorai.007G087900 I
Gorai.007G116100 Gossypium raimondii Gorai.007G116100 I
Gorai.011G029400 Gossypium raimondii Gorai.011G029400 I
GSMUA_Achr1G08440_001 Musa acuminata GSMUA_Achr1G08440_001 I
GSMUA_Achr2G03070_001 Musa acuminata GSMUA_Achr2G03070_001 I
GSMUA_Achr5G13440_001 Musa acuminata GSMUA_Achr5G13440_001 I
LPERR04G17030 Leersia perrieri LPERR04G17030 I
Lus10005548.g Linum usitatissimum Lus10005548.g I
Lus10013999.g Linum usitatissimum Lus10013999.g I
Lus10015421.g Linum usitatissimum Lus10015421.g I
Lus10018610.g Linum usitatissimum Lus10018610.g I
Lus10039846.g Linum usitatissimum Lus10039846.g I
MDP0000142582 Malus domestica MDP0000142582 N
MDP0000156994 Malus domestica MDP0000156994 I
MDP0000158607 Malus domestica MDP0000158607 I
MDP0000589558 Malus domestica MDP0000589558 I
MDP0000861601 Malus domestica MDP0000861601 I
MDP0000865739 Malus domestica MDP0000865739 I
mgf001202m Mimulus guttatus mgf001202m I
mgf001295m Mimulus guttatus mgf001295m I
mgf016414m Mimulus guttatus mgf016414m I
mgf017351m Mimulus guttatus mgf017351m I
MLOC_13032 Hordeum vulgare MLOC_13032 I
MTR_2g014200 Medicago truncatula MTR_2g014200 I
MTR_4g088555 Medicago truncatula MTR_4g088555 I
MTR_7g444860 Medicago truncatula MTR_7g444860 I
MTR_8g463140 Medicago truncatula MTR_8g463140 I
OB04G27960 Oryza brachyantha OB04G27960 I
OBART04G20940 Oryza barthii OBART04G20940 I
OBART07G15570 Oryza barthii OBART07G15570 I
OGLUM04G20870 Oryza glumaepatula OGLUM04G20870 I
OGLUM07G15250 Oryza glumaepatula OGLUM07G15250 I
OMERI04G17360 Oryza meridionalis OMERI04G17360 I
OMERI07G12270 Oryza meridionalis OMERI07G12270 I
ONIVA04G19190 Oryza nivara ONIVA04G19190 I
ONIVA07G14170 Oryza nivara ONIVA07G14170 I
OPUNC04G18620 Oryza punctata OPUNC04G18620 I
OPUNC07G14360 Oryza punctata OPUNC07G14360 N
orange1.1g009653m.g Citrus sinensis orange1.1g009653m.g I
orange1.1g032310m.g Citrus sinensis orange1.1g032310m.g I
ORGLA04G0180000 Oryza glaberrima ORGLA04G0180000 I
ORUFI04G22540 Oryza rufipogon ORUFI04G22540 I
ORUFI07G16070 Oryza rufipogon ORUFI07G16070 I
SPL7 Oryza sativa OS04G0551500 I
PGSC0003DMG400022824 Solanum tuberosum PGSC0003DMG400022824 I
PGSC0003DMG401029709 Solanum tuberosum PGSC0003DMG401029709 I
PK26639.1 Cannabis sativa PK26639.1 I
Pm010075 Prunus mume Pm010075 I
Pm011381 Prunus mume Pm011381 I
Pm014154 Prunus mume Pm014154 I
POPTR_0001s13630 Populus trichocarpa POPTR_0001s13630 I
POPTR_0002s14330 Populus trichocarpa POPTR_0002s14330 I
POPTR_0004s04630 Populus trichocarpa POPTR_0004s04630 I
POPTR_0014s05690 Populus trichocarpa POPTR_0014s05690 I
PRUPE_ppa011968mg Prunus persica PRUPE_ppa011968mg I
PRUPE_ppa012607mg Prunus persica PRUPE_ppa012607mg I
PRUPE_ppa022739mg Prunus persica PRUPE_ppa022739mg I
SapurV1A.0012s0510 Salix purpurea SapurV1A.0012s0510 I
SapurV1A.0033s0320 Salix purpurea SapurV1A.0033s0320 I
SapurV1A.0329s0040 Salix purpurea SapurV1A.0329s0040 I
SapurV1A.1460s0110 Salix purpurea SapurV1A.1460s0110 I
Si032170m.g Setaria italica Si032170m.g I
Solyc07g053810.2 Solanum lycopersicum Solyc07g053810.2 I
Solyc10g009080.2 Solanum lycopersicum Solyc10g009080.2 I
TCM_005620 Theobroma cacao TCM_005620 I
TCM_029832 Theobroma cacao TCM_029832 I
Thhalv10017406m.g Eutrema salsugineum Thhalv10017406m.g I
Traes_2BS_186EA570A Triticum aestivum Traes_2BS_186EA570A I
TRIUR3_23102 Triticum urartu TRIUR3_23102 I
SPL3 Vitis vinifera VIT_10s0003g00050 I
VIT_15s0021g02290 Vitis vinifera VIT_15s0021g02290 I