AMTR_s00022p00165560 (Amborella trichopoda)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00096 (zf-C2H2) IPR007087 AMTR_s00022p00165560 T080674_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ZFP5
M01851_2.00 		Arabidopsis thaliana
DSWTNNNN
NNNNAWSH		 PBM
Weirauch et al.(2014)
pTH7539 		0.764 0.696
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ERN11572 C2H2 ZF 78 100

Links

Other C2H2 ZF family TFs
Other Amborella trichopoda TFs

92 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29820.m001008 Ricinus communis 29820.m001008 I
DREB2A Arabidopsis thaliana AT5G05410 D
Bo1g141310 Brassica oleracea Bo1g141310 I
Bo2g006960 Brassica oleracea Bo2g006960 I
Bostr.13129s0423 Boechera stricta Bostr.13129s0423 I
Bostr.19424s1037 Boechera stricta Bostr.19424s1037 I
Bra005852 Brassica rapa Bra005852 I
Bra028759 Brassica rapa Bra028759 I
Bra034159 Brassica rapa Bra034159 I
Cagra.1504s0045 Capsella grandiflora Cagra.1504s0045 I
Cagra.1655s0066 Capsella grandiflora Cagra.1655s0066 I
Cagra.7053s0020 Capsella grandiflora Cagra.7053s0020 I
Carubv10001099m.g Capsella rubella Carubv10001099m.g I
Carubv10013771m.g Capsella rubella Carubv10013771m.g I
Carubv10023556m.g Capsella rubella Carubv10023556m.g I
cassava46663.m1 Manihot esculenta cassava46663.m1 I
chr1.LjT01D01.90.nd Lotus japonicus chr1.LjT01D01.90.nd I
Eucgr.K02952 Eucalyptus grandis Eucgr.K02952 I
evm.TU.supercontig_19.121 Carica papaya evm.TU.supercontig_19.121 I
DREB2B Arabidopsis lyrata fgenesh2_kg.3__1148__AT3G11020.1 I
DREB2A Arabidopsis lyrata fgenesh2_kg.6__469__AT5G05410.1 I
GLYMA07G19221 Glycine max GLYMA07G19221 I
GLYMA18G43750 Glycine max GLYMA18G43750 I
GSMUA_Achr9G04630_001 Musa acuminata GSMUA_Achr9G04630_001 I
GSMUA_AchrUn_randomG14580_001 Musa acuminata GSMUA_AchrUn_randomG14580_001 I
MTR_7g070220 Medicago truncatula MTR_7g070220 I
PDK_20s1493381g003 Phoenix dactylifera PDK_20s1493381g003 I
PGSC0003DMG400027117 Solanum tuberosum PGSC0003DMG400027117 I
PK07402.1 Cannabis sativa PK07402.1 D
Solyc05g052410.1 Solanum lycopersicum Solyc05g052410.1 I
Solyc06g050520.1 Solanum lycopersicum Solyc06g050520.1 I
TCM_021596 Theobroma cacao TCM_021596 I
Thhalv10021161m.g Eutrema salsugineum Thhalv10021161m.g I