ENSLACG00000002747 (Latimeria chalumnae)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSLACG00000002747 T164595_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.894 0.894
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000003069 CSD 36 108

Links

Other CSD family TFs
Other Latimeria chalumnae TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I 0.818
Aan_R005866 Calypte anna Aan_R005866 I 0.909
Aan_R007025 Calypte anna Aan_R007025 I 0.894
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.894
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.939
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.924
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.879
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.894
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.894
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.894
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.924
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.848
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.909
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.894
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.894
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.864
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.894
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.879
LIN28B Canis familiaris ENSCAFG00000003598 I 0.894
LIN28A Canis familiaris ENSCAFG00000012488 I 0.894
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.894
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.894
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.894
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.773
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.773
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.864
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.894
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.879
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.894
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.758
LIN28A Danio rerio ENSDARG00000004328 I 0.909
lin28a Danio rerio ENSDARG00000016999 I 0.924
lin28b Danio rerio ENSDARG00000052511 I 0.848
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.894
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.894
LIN28A Equus caballus ENSECAG00000020267 I 0.894
LIN28B Equus caballus ENSECAG00000020994 I 0.879
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.894
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.803
LIN28B Echinops telfairi ENSETEG00000015340 I 0.864
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.909
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.894
LIN28B Felis catus ENSFCAG00000005058 I 0.894
LIN28A Felis catus ENSFCAG00000012810 I 0.894
LIN28A Homo sapiens ENSG00000131914 I 0.894
LIN28B Homo sapiens ENSG00000187772 D 0.894
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.864
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.864
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.894
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.909
LIN28B Gallus gallus ENSGALG00000026761 I 0.864
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.894
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.894
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.833
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.818
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.879
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.894
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.894
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.894
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.955
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.788
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.894
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.909
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.894
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.894
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.894
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.894
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.879
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.894
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.894
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.894
Lin28a Mus musculus ENSMUSG00000050966 I 0.894
Lin28b Mus musculus ENSMUSG00000063804 I 0.803
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.894
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.894
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.879
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.833
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.894
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.879
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.894
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.742
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.758
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.894
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.894
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.894
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.894
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.727
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.924
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.894
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.894
LIN28B Oryzias latipes ENSORLG00000012891 I 0.879
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.924
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.894
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.894
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.894
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.970
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.864
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.894
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.894
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.894
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.879
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.894
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.894
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.894
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.803
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.894
LIN28B Sorex araneus ENSSARG00000008374 I 0.894
LIN28A Sus scrofa ENSSSCG00000003557 I 0.894
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.879
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.909
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.894
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.894
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.803
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.864
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.955
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.879
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.803
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.879
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.894
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.894
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.894
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.894
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.848
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.939
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.894
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.894
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.758
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.894
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.894
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.894
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.879
lin28a Xenopus tropicalis XB-GENE-491384 I 0.924
lin28a.S Xenopus laevis XB-GENE-866059 I 0.894
yakG040859 Bos grunniens yakG040859 I 0.879