si:ch1073-284b18.2 (Takifugu rubripes)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00313 (CSD) IPR002059 ENSTRUG00000006069 T164821_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.894 0.894
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.894 0.894
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTRUP00000014746 CSD 40 112
ENSTRUP00000014747 CSD 39 111

Links

Other CSD family TFs
Other Takifugu rubripes TFs

135 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I 0.818
Aan_R005866 Calypte anna Aan_R005866 I 0.909
Aan_R007025 Calypte anna Aan_R007025 I 0.894
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.894
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.939
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.924
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.879
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.909
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.894
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.879
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.924
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.833
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.894
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.894
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.909
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.879
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.909
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.879
LIN28B Canis familiaris ENSCAFG00000003598 I 0.894
LIN28A Canis familiaris ENSCAFG00000012488 I 0.909
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.894
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.894
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.909
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.788
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.788
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.879
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.894
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.894
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.909
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.758
LIN28A Danio rerio ENSDARG00000004328 I 0.894
lin28a Danio rerio ENSDARG00000016999 I 0.924
lin28b Danio rerio ENSDARG00000052511 I 0.833
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.909
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.894
LIN28A Equus caballus ENSECAG00000020267 I 0.909
LIN28B Equus caballus ENSECAG00000020994 I 0.879
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.894
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.818
LIN28B Echinops telfairi ENSETEG00000015340 I 0.864
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.909
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.894
LIN28B Felis catus ENSFCAG00000005058 I 0.894
LIN28A Felis catus ENSFCAG00000012810 I 0.909
LIN28A Homo sapiens ENSG00000131914 I 0.909
LIN28B Homo sapiens ENSG00000187772 D 0.894
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.864
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.848
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.924
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.909
LIN28B Gallus gallus ENSGALG00000026761 I 0.864
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.894
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.909
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.833
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.818
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.909
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.955
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.894
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.909
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.894
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.939
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.788
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.909
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.909
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.894
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.909
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.894
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.894
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.894
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.894
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.894
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.909
Lin28a Mus musculus ENSMUSG00000050966 I 0.909
Lin28b Mus musculus ENSMUSG00000063804 I 0.803
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.909
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.894
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.879
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.848
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.909
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.879
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.909
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.758
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.758
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.909
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.909
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.909
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.894
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.727
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.955
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.909
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.894
LIN28B Oryzias latipes ENSORLG00000012891 I 0.864
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.955
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.909
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.894
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.909
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.985
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.848
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.909
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.894
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.894
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.894
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.894
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.894
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.909
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.803
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.909
LIN28B Sorex araneus ENSSARG00000008374 I 0.894
LIN28A Sus scrofa ENSSSCG00000003557 I 0.909
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.879
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.894
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.909
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.894
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.788
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.848
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.864
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.803
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.879
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.909
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.909
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.894
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.909
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.833
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.970
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.894
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.909
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.758
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.894
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.909
lin28b Xenopus tropicalis XB-GENE-1218969 I 0.879
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.864
lin28a Xenopus tropicalis XB-GENE-491384 I 0.909
lin28a.S Xenopus laevis XB-GENE-866059 I 0.879
yakG040859 Bos grunniens yakG040859 I 0.894