lin28b (Xenopus tropicalis)
CSD

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00313 (CSD) IPR002059 XB-GENE-1218969 T165580_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN28B
M04663_2.00 		Homo sapiens
CGCGRWRDRRCDGCG
CGCHGYYHYWYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_HT-SELEX 		0.909 0.909
LIN28B
M04664_2.00 		Homo sapiens
CGCGRTRNNRCDGCG
CGCHGYNNYAYCGCG		 SELEX
Yin et al.(2017)
LIN28B_FL_Methyl-HT-SELEX 		0.909 0.909
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAI67886 CSD 33 105

Links

Other CSD family TFs
Other Xenopus tropicalis TFs

134 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aan_R002277 Calypte anna Aan_R002277 I 0.848
Aan_R005866 Calypte anna Aan_R005866 I 0.864
Aan_R007025 Calypte anna Aan_R007025 I 0.924
Afo_R003680 Aptenodytes forsteri Afo_R003680 I 0.924
Alligator_sinensis_CCG010967.1 Alligator sinensis Alligator_sinensis_CCG010967.1 I 0.909
Cmyd_10009744 Chelonia mydas Cmyd_10009744 I 0.894
LIN28B Anolis carolinensis ENSACAG00000003957 I 0.924
ENSAMEG00000010582 Ailuropoda melanoleuca ENSAMEG00000010582 I 0.848
ENSAMEG00000011453 Ailuropoda melanoleuca ENSAMEG00000011453 I 0.909
ENSAMXG00000001433 Astyanax mexicanus ENSAMXG00000001433 I 0.894
ENSAMXG00000001573 Astyanax mexicanus ENSAMXG00000001573 I 0.864
ENSAMXG00000001888 Astyanax mexicanus ENSAMXG00000001888 I 0.864
ENSAMXG00000016813 Astyanax mexicanus ENSAMXG00000016813 I 0.894
ENSAPLG00000014264 Anas platyrhynchos ENSAPLG00000014264 I 0.924
ENSBTAG00000040497 Bos taurus ENSBTAG00000040497 I 0.848
ENSBTAG00000048256 Bos taurus ENSBTAG00000048256 I 0.833
ENSBTAP00000004196-D2 Bos grunniens ENSBTAP00000004196-D2 I 0.848
ENSBTAP00000053651-D1 Bos grunniens ENSBTAP00000053651-D1 I 0.924
LIN28B Canis familiaris ENSCAFG00000003598 I 0.909
LIN28A Canis familiaris ENSCAFG00000012488 I 0.848
LIN28B Choloepus hoffmanni ENSCHOG00000001682 I 0.909
LIN28B Callithrix jacchus ENSCJAG00000001671 I 0.909
LIN28A Callithrix jacchus ENSCJAG00000009796 I 0.848
ENSCJAG00000016916 Callithrix jacchus ENSCJAG00000016916 I 0.727
ENSCJAG00000021979 Callithrix jacchus ENSCJAG00000021979 I 0.727
ENSCJAG00000022770 Callithrix jacchus ENSCJAG00000022770 I 0.818
LIN28B Cavia porcellus ENSCPOG00000006178 I 0.924
ENSCPOG00000024027 Cavia porcellus ENSCPOG00000024027 I 0.833
ENSCSAG00000000975 Chlorocebus sabaeus ENSCSAG00000000975 I 0.848
ENSCSAG00000014708 Chlorocebus sabaeus ENSCSAG00000014708 I 0.758
LIN28A Danio rerio ENSDARG00000004328 I 0.833
lin28a Danio rerio ENSDARG00000016999 I 0.879
lin28b Danio rerio ENSDARG00000052511 I 0.879
LIN28A Dasypus novemcinctus ENSDNOG00000010710 I 0.848
LIN28B Dasypus novemcinctus ENSDNOG00000015300 I 0.909
LIN28A Equus caballus ENSECAG00000020267 I 0.848
LIN28B Equus caballus ENSECAG00000020994 I 0.924
LIN28B Erinaceus europaeus ENSEEUG00000003632 I 0.939
LIN28A Erinaceus europaeus ENSEEUG00000012085 I 0.758
LIN28B Echinops telfairi ENSETEG00000015340 I 0.909
ENSFALG00000000374 Ficedula albicollis ENSFALG00000000374 I 0.864
ENSFALG00000011574 Ficedula albicollis ENSFALG00000011574 I 0.924
LIN28B Felis catus ENSFCAG00000005058 I 0.909
LIN28A Felis catus ENSFCAG00000012810 I 0.848
LIN28A Homo sapiens ENSG00000131914 I 0.848
LIN28B Homo sapiens ENSG00000187772 D 0.909
lin28a Gasterosteus aculeatus ENSGACG00000007826 I 0.833
LIN28B Gasterosteus aculeatus ENSGACG00000009428 I 0.894
si:ch1073-284b18.2 Gasterosteus aculeatus ENSGACG00000013893 I 0.848
ENSGALG00000000388 Gallus gallus ENSGALG00000000388 I 0.864
LIN28B Gallus gallus ENSGALG00000026761 I 0.924
LIN28B Gorilla gorilla ENSGGOG00000015437 I 0.909
LIN28A Gorilla gorilla ENSGGOG00000024918 I 0.848
ENSGMOG00000010704 Gadus morhua ENSGMOG00000010704 I 0.864
ENSGMOG00000015523 Gadus morhua ENSGMOG00000015523 I 0.788
ENSGMOG00000015660 Gadus morhua ENSGMOG00000015660 I 0.818
ENSLACG00000002747 Latimeria chalumnae ENSLACG00000002747 I 0.894
ENSLACG00000004053 Latimeria chalumnae ENSLACG00000004053 I 0.955
LIN28A Loxodonta africana ENSLAFG00000017525 I 0.848
LIN28B Loxodonta africana ENSLAFG00000017788 I 0.909
ENSLOCG00000003353 Lepisosteus oculatus ENSLOCG00000003353 I 0.894
ENSLOCG00000016539 Lepisosteus oculatus ENSLOCG00000016539 I 0.879
ENSMEUG00000008743 Macropus eugenii ENSMEUG00000008743 I 0.848
LIN28A Meleagris gallopavo ENSMGAG00000009456 I 0.864
ENSMICG00000002297 Microcebus murinus ENSMICG00000002297 I 0.909
ENSMLUG00000010158 Myotis lucifugus ENSMLUG00000010158 I 0.848
LIN28B Macaca mulatta ENSMMUG00000014470 I 0.909
ENSMMUP00000018998 Macaca fascicularis ENSMMUP00000018998 I 0.909
LIN28A Monodelphis domestica ENSMODG00000014236 I 0.833
LIN28B Monodelphis domestica ENSMODG00000018035 I 0.924
ENSMPUG00000009489 Mustela putorius furo ENSMPUG00000009489 I 0.909
ENSMPUG00000015724 Mustela putorius furo ENSMPUG00000015724 I 0.848
Lin28a Mus musculus ENSMUSG00000050966 I 0.848
Lin28b Mus musculus ENSMUSG00000063804 I 0.833
ENSNLEG00000009294 Nomascus leucogenys ENSNLEG00000009294 I 0.848
ENSNLEG00000014146 Nomascus leucogenys ENSNLEG00000014146 I 0.909
LIN28B Ornithorhynchus anatinus ENSOANG00000010299 I 0.909
ENSOARG00000003913 Ovis aries ENSOARG00000003913 I 0.818
ENSOARG00000004614 Ovis aries ENSOARG00000004614 I 0.848
ENSOARG00000011404 Ovis aries ENSOARG00000011404 I 0.924
ENSOCUG00000000299 Oryctolagus cuniculus ENSOCUG00000000299 I 0.848
ENSOCUG00000011640 Oryctolagus cuniculus ENSOCUG00000011640 I 0.712
LIN28B Oryctolagus cuniculus ENSOCUG00000017850 I 0.758
ENSOCUG00000027473 Oryctolagus cuniculus ENSOCUG00000027473 I 0.848
ENSOCUG00000027786 Oryctolagus cuniculus ENSOCUG00000027786 I 0.848
LIN28A Otolemur garnettii ENSOGAG00000003971 I 0.848
LIN28B Otolemur garnettii ENSOGAG00000011042 I 0.909
ENSONIG00000014706 Oreochromis niloticus ENSONIG00000014706 I 0.727
ENSONIG00000016204 Oreochromis niloticus ENSONIG00000016204 I 0.879
LIN28A Ochotona princeps ENSOPRG00000001591 I 0.848
LIN28B Ochotona princeps ENSOPRG00000006333 I 0.909
LIN28B Oryzias latipes ENSORLG00000012891 I 0.879
si:ch1073-284b18.2 Oryzias latipes ENSORLG00000014369 I 0.864
ENSP00000254231 Macaca fascicularis ENSP00000254231 I 0.848
ENSPANG00000005196 Papio anubis ENSPANG00000005196 I 0.909
ENSPANG00000009841 Papio anubis ENSPANG00000009841 I 0.848
ENSPFOG00000014054 Poecilia formosa ENSPFOG00000014054 I 0.894
ENSPFOG00000019352 Poecilia formosa ENSPFOG00000019352 I 0.864
ENSPPYG00000001684 Pongo abelii ENSPPYG00000001684 I 0.848
ENSPPYG00000016875 Pongo abelii ENSPPYG00000016875 I 0.909
ENSPSIG00000002635 Pelodiscus sinensis ENSPSIG00000002635 I 0.924
LIN28A Pan troglodytes ENSPTRG00000000384 I 0.833
LIN28B Pan troglodytes ENSPTRG00000018453 I 0.909
LIN28B Pteropus vampyrus ENSPVAG00000008797 I 0.909
LIN28A Pteropus vampyrus ENSPVAG00000017267 I 0.848
Lin28b Rattus norvegicus ENSRNOG00000025938 I 0.833
Lin28a Rattus norvegicus ENSRNOG00000060320 I 0.848
LIN28B Sorex araneus ENSSARG00000008374 I 0.909
LIN28A Sus scrofa ENSSSCG00000003557 I 0.848
ENSSSCG00000004365 Sus scrofa ENSSSCG00000004365 I 0.924
ENSSTOG00000002692 Ictidomys tridecemlineatus ENSSTOG00000002692 I 0.909
ENSSTOG00000004329 Ictidomys tridecemlineatus ENSSTOG00000004329 I 0.848
LIN28B Taeniopygia guttata ENSTGUG00000012225 I 0.924
lin28a Tetraodon nigroviridis ENSTNIG00000009802 I 0.758
LIN28B Tetraodon nigroviridis ENSTNIG00000012302 I 0.879
si:ch1073-284b18.2 Takifugu rubripes ENSTRUG00000006069 I 0.879
LIN28B Takifugu rubripes ENSTRUG00000008428 I 0.879
lin28a Takifugu rubripes ENSTRUG00000009454 I 0.788
ENSTSYG00000006480 Tarsius syrichta ENSTSYG00000006480 I 0.924
ENSTSYG00000011513 Tarsius syrichta ENSTSYG00000011513 I 0.848
LIN28A Tursiops truncatus ENSTTRG00000005678 I 0.848
LIN28B Tursiops truncatus ENSTTRG00000014919 I 0.909
ENSVPAG00000008073 Vicugna pacos ENSVPAG00000008073 I 0.848
ENSXMAG00000003450 Xiphophorus maculatus ENSXMAG00000003450 I 0.848
ENSXMAG00000014593 Xiphophorus maculatus ENSXMAG00000014593 I 0.864
Gfo_R012200 Geospiza fortis Gfo_R012200 I 0.924
Myotis_brandtii_Lin28a_10029661 Myotis brandtii Myotis_brandtii_Lin28a_10029661 I 0.848
Myotis_brandtii_LIN28B_10034705 Myotis brandtii Myotis_brandtii_LIN28B_10034705 I 0.758
Pvit_09294 Pogona vitticeps Pvit_09294 I 0.924
Pvit_17184 Pogona vitticeps Pvit_17184 I 0.864
lin28b.S Xenopus laevis XB-GENE-1218973 I 0.985
lin28a Xenopus tropicalis XB-GENE-491384 I 0.864
lin28a.S Xenopus laevis XB-GENE-866059 I 0.833
yakG040859 Bos grunniens yakG040859 I 0.848