Bra012080 (Brassica rapa)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00320 (GATA) IPR000679 Bra012080 T191951_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GATA19
M06893_2.00 		Arabidopsis thaliana
BNGATCBGATY
RATCVGATCNV		 Dap-seq
OMalley et al.(2016)
GATA19_col_a 		0.836 0.944
GATA19
M06894_2.00 		Arabidopsis thaliana
HNGATCBGATY
RATCVGATCND		 Dap-seq
OMalley et al.(2016)
GATA19_colamp_a 		0.836 0.944
GATA20
M06884_2.00 		Arabidopsis thaliana
GATCBGAT
ATCVGATC		 Dap-seq
OMalley et al.(2016)
GATA20_col_a 		0.825 0.917
GATA20
M06885_2.00 		Arabidopsis thaliana
HNGATCNGATBND
HNVATCNGATCND		 Dap-seq
OMalley et al.(2016)
GATA20_colamp_a 		0.825 0.917
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra012080.1-P GATA 108 143

Links

Other GATA family TFs
Other Brassica rapa TFs

129 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29727.m000472 Ricinus communis 29727.m000472 I
AMTR_s00007p00020440 Amborella trichopoda AMTR_s00007p00020440 I
ASIL1 Arabidopsis thaliana AT1G54060 D
ASIL2 Arabidopsis thaliana AT3G14180 D
Bo3g065930 Brassica oleracea Bo3g065930 I
Bo3g184450 Brassica oleracea Bo3g184450 I
Bo6g033010 Brassica oleracea Bo6g033010 I
Bo6g050870 Brassica oleracea Bo6g050870 I
Bostr.28625s0284 Boechera stricta Bostr.28625s0284 I
Bostr.28625s0287 Boechera stricta Bostr.28625s0287 I
Bostr.7128s0077 Boechera stricta Bostr.7128s0077 I
Bra014370 Brassica rapa Bra014370 I
Bra037960 Brassica rapa Bra037960 I
Cagra.0769s0020 Capsella grandiflora Cagra.0769s0020 I
Cagra.3631s0002 Capsella grandiflora Cagra.3631s0002 I
Cagra.3631s0005 Capsella grandiflora Cagra.3631s0005 I
Carubv10009310m.g Capsella rubella Carubv10009310m.g I
Carubv10015321m.g Capsella rubella Carubv10015321m.g I
Carubv10015798m.g Capsella rubella Carubv10015798m.g I
cassava116.valid.m1 Manihot esculenta cassava116.valid.m1 I
cassava34877.m1 Manihot esculenta cassava34877.m1 I
cassava47424.m1 Manihot esculenta cassava47424.m1 I
Ciclev10026005m.g Citrus clementina Ciclev10026005m.g I
Cla015773 Citrullus lanatus Cla015773 I
Cucsa.359990 Cucumis sativus Cucsa.359990 I
fgenesh1_pg.C_scaffold_3001317 Arabidopsis lyrata fgenesh1_pg.C_scaffold_3001317 I
fgenesh2_kg.3__1533__AT3G14180.1 Arabidopsis lyrata fgenesh2_kg.3__1533__AT3G14180.1 I
gene05400-v1.0-hybrid Fragaria vesca gene05400-v1.0-hybrid I
GLYMA07G04790 Glycine max GLYMA07G04790 I
GLYMA16G01370 Glycine max GLYMA16G01370 I
Gorai.009G144800 Gossypium raimondii Gorai.009G144800 I
Gorai.010G235700 Gossypium raimondii Gorai.010G235700 I
GSMUA_Achr9G14340_001 Musa acuminata GSMUA_Achr9G14340_001 N
LjSGA_010694.1 Lotus japonicus LjSGA_010694.1 I
MDP0000255104 Malus domestica MDP0000255104 I
MDP0000281471 Malus domestica MDP0000281471 I
MTR_8g022290 Medicago truncatula MTR_8g022290 I
orange1.1g019413m.g Citrus sinensis orange1.1g019413m.g I
PGSC0003DMG400037972 Solanum tuberosum PGSC0003DMG400037972 I
PK22475.1 Cannabis sativa PK22475.1 N
Pm013209 Prunus mume Pm013209 I
POPTR_0001s06330 Populus trichocarpa POPTR_0001s06330 N
POPTR_0003s19840 Populus trichocarpa POPTR_0003s19840 I
PRUPE_ppa023115mg Prunus persica PRUPE_ppa023115mg I
SapurV1A.0009s0880 Salix purpurea SapurV1A.0009s0880 I
SapurV1A.0504s0110 Salix purpurea SapurV1A.0504s0110 N
SapurV1A.2810s0010 Salix purpurea SapurV1A.2810s0010 N
Solyc03g122030.1 Solanum lycopersicum Solyc03g122030.1 I
TCM_029209 Theobroma cacao TCM_029209 I
Thhalv10011582m.g Eutrema salsugineum Thhalv10011582m.g I
Thhalv10020691m.g Eutrema salsugineum Thhalv10020691m.g I
VIT_09s0002g00720 Vitis vinifera VIT_09s0002g00720 N