Ciclev10032018m.g (Citrus clementina)
GATA

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00320 (GATA) IPR000679 Ciclev10032018m.g T196499_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q76DY3_TOBAC
M10600_2.00 		Nicotiana tabacum Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AGP1_01 		0.867 0.972
GATA8
M02000_2.00 		Arabidopsis thaliana
NNGATYYVN
NBRRATCNN		 PBM
Weirauch et al.(2014)
pTH7665 		0.848 0.944
GATA1
M01998_2.00 		Arabidopsis thaliana
NNNVATBNNN
NNNVATBNNN		 PBM
Weirauch et al.(2014)
pTH8144 		0.847 0.833
GATA1
M06887_2.00 		Arabidopsis thaliana
RYGRTGRTGRTGRTG
CAYCAYCAYCAYCRY		 Dap-seq
OMalley et al.(2016)
GATA1_col_a 		0.847 0.833
GATA1
M06888_2.00 		Arabidopsis thaliana
HNYAGATCYRRWYB
VRWYYRGATCTRND		 Dap-seq
OMalley et al.(2016)
GATA1_colamp_a 		0.847 0.833
GATA6
M01999_2.00 		Arabidopsis thaliana
NVRATVNDNN
NNHNBATYBN		 PBM
Weirauch et al.(2014)
pTH7317 		0.847 0.806
GATA6
M06890_2.00 		Arabidopsis thaliana
YAGATCTARAWNH
DNWTYTAGATCTR		 Dap-seq
OMalley et al.(2016)
GATA6_col200_a 		0.847 0.806
GATA9
M02002_2.00 		Arabidopsis thaliana
NHAGATCTDNN
NNHAGATCTDN		 PBM
Weirauch et al.(2014)
pTH7378 		0.843 0.833
GATA12
M00863_2.00 		Arabidopsis thaliana
NNNGATBN
NVATCNNN		 PBM
Franco-Zorrilla et al.(2014)
GATA12 		0.843 0.833
GATA12
M06895_2.00 		Arabidopsis thaliana
DWWYYAGATCYRR
YYRGATCTRRWWH		 Dap-seq
OMalley et al.(2016)
GATA12_col_a 		0.843 0.833
GATA12
M06896_2.00 		Arabidopsis thaliana
YRGATCTRRWYYNDN
NHNRRWYYAGATCYR		 Dap-seq
OMalley et al.(2016)
GATA12_colamp_a 		0.843 0.833
GATA4
M00727_2.00 		Arabidopsis thaliana
NNNGATCNNN
NNNGATCNNN		 PBM
Chang et al.(2013)
pTH7196 		0.832 0.806
GATA4
M06891_2.00 		Arabidopsis thaliana
HNNYRGATCYRRWYY
RRWYYRGATCYRNND		 Dap-seq
OMalley et al.(2016)
GATA4_col_a 		0.832 0.806
GATA11
M01995_2.00 		Arabidopsis thaliana
CAGATCTH
DAGATCTG		 PBM
Weirauch et al.(2014)
pTH7486 		0.823 0.806
GATA11
M06882_2.00 		Arabidopsis thaliana
HYYAGATCYRRWWHH
DDWWYYRGATCTRRD		 Dap-seq
OMalley et al.(2016)
GATA11_col_a 		0.823 0.806
GATA10
M01994_2.00 		Arabidopsis thaliana
CAGATCTA
TAGATCTG		 PBM
Weirauch et al.(2014)
pTH7615 		0.819 0.778
GATA3
M02003_2.00 		Arabidopsis thaliana
NNNNGATBNN
NNVATCNNNN		 PBM
Weirauch et al.(2014)
pTH7657 		0.819 0.750
GATA7
M02004_2.00 		Arabidopsis thaliana
NNNNATNNNN
NNNNATNNNN		 PBM
Weirauch et al.(2014)
pTH7658 		0.819 0.750
For this family, TFs with SR scores > 0.802 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10032015m GATA 245 280
Ciclev10032016m GATA 245 280
Ciclev10032018m GATA 245 280

Links

Other GATA family TFs
Other Citrus clementina TFs

614 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
28152.m000914 Ricinus communis 28152.m000914 N
30170.m013749 Ricinus communis 30170.m013749 N
Al_scaffold_0797_1 Arabidopsis lyrata Al_scaffold_0797_1 N
AMTR_s00164p00062120 Amborella trichopoda AMTR_s00164p00062120 N
Aquca_017_00066 Aquilegia coerulea Aquca_017_00066 N
Aquca_042_00162 Aquilegia coerulea Aquca_042_00162 N
Aquca_042_00163 Aquilegia coerulea Aquca_042_00163 N
BHLH54 Arabidopsis thaliana AT1G27740 N
AT2G14760 Arabidopsis thaliana AT2G14760 N
BHLH85 Arabidopsis thaliana AT4G33880 N
BHLH139 Arabidopsis thaliana AT5G43175 N
BGIOSGA010239 Oryza indica BGIOSGA010239 N
BGIOSGA011251 Oryza indica BGIOSGA011251 N
BGIOSGA023988 Oryza indica BGIOSGA023988 N
BGIOSGA035917 Oryza indica BGIOSGA035917 N
Bo1g007780 Brassica oleracea Bo1g007780 N
Bo3g142890 Brassica oleracea Bo3g142890 N
Bo3g169400 Brassica oleracea Bo3g169400 N
Bo5g052310 Brassica oleracea Bo5g052310 N
Bo7g048630 Brassica oleracea Bo7g048630 N
Bo7g116460 Brassica oleracea Bo7g116460 N
Bostr.15697s0100 Boechera stricta Bostr.15697s0100 N
Bostr.2199s0029 Boechera stricta Bostr.2199s0029 N
Bostr.3148s0158 Boechera stricta Bostr.3148s0158 N
Bostr.7867s1234 Boechera stricta Bostr.7867s1234 N
Bra010921 Brassica rapa Bra010921 N
Bra011476 Brassica rapa Bra011476 N
Bra030063 Brassica rapa Bra030063 N
Bra032846 Brassica rapa Bra032846 N
Bra034587 Brassica rapa Bra034587 N
Bra036969 Brassica rapa Bra036969 N
BRADI1G14600 Brachypodium distachyon BRADI1G14600 N
BRADI1G22960 Brachypodium distachyon BRADI1G22960 N
BRADI1G70860 Brachypodium distachyon BRADI1G70860 N
BRADI4G03070 Brachypodium distachyon BRADI4G03070 N
Cagra.1103s0007 Capsella grandiflora Cagra.1103s0007 N
Cagra.1305s0010 Capsella grandiflora Cagra.1305s0010 N
Cagra.1822s0081 Capsella grandiflora Cagra.1822s0081 N
Cagra.9228s0001 Capsella grandiflora Cagra.9228s0001 N
Carubv10006623m.g Capsella rubella Carubv10006623m.g N
Carubv10011072m.g Capsella rubella Carubv10011072m.g N
Carubv10015484m.g Capsella rubella Carubv10015484m.g N
Carubv10028625m.g Capsella rubella Carubv10028625m.g N
cassava14986.m1 Manihot esculenta cassava14986.m1 N
cassava20440.m1 Manihot esculenta cassava20440.m1 N
cassava25589.m1 Manihot esculenta cassava25589.m1 N
cassava38950.m1 Manihot esculenta cassava38950.m1 N
Ca_01588 Cicer arietinum Ca_01588 N
Ca_05644 Cicer arietinum Ca_05644 N
Ca_11909 Cicer arietinum Ca_11909 N
Ca_18366 Cicer arietinum Ca_18366 N
chr1.CM0088.610.nd Lotus japonicus chr1.CM0088.610.nd N
chr5.CM0096.500.nd Lotus japonicus chr5.CM0096.500.nd N
chr5.CM0200.480.nc Lotus japonicus chr5.CM0200.480.nc N
Ciclev10003450m.g Citrus clementina Ciclev10003450m.g N
Ciclev10030309m.g Citrus clementina Ciclev10030309m.g N
Cla016346 Citrullus lanatus Cla016346 N
Cla020918 Citrullus lanatus Cla020918 N
Cla022968 Citrullus lanatus Cla022968 N
Cucsa.097490 Cucumis sativus Cucsa.097490 N
Cucsa.219180 Cucumis sativus Cucsa.219180 N
Cucsa.352750 Cucumis sativus Cucsa.352750 N
Eucgr.F02259 Eucalyptus grandis Eucgr.F02259 N
Eucgr.G01234 Eucalyptus grandis Eucgr.G01234 N
Eucgr.I01069 Eucalyptus grandis Eucgr.I01069 N
evm.TU.supercontig_106.57 Carica papaya evm.TU.supercontig_106.57 N
evm.TU.supercontig_142.14 Carica papaya evm.TU.supercontig_142.14 N
F775_02582 Aegilops tauschii F775_02582 N
F775_02706 Aegilops tauschii F775_02706 N
F775_27628 Aegilops tauschii F775_27628 N
RSL4 Arabidopsis lyrata fgenesh2_kg.1__2933__AT1G27740.1 N
fgenesh2_kg.3__3067__AT2G14760.1 Arabidopsis lyrata fgenesh2_kg.3__3067__AT2G14760.1 N
RSL2 Arabidopsis lyrata fgenesh2_kg.7__724__AT4G33880.1 N
fgenesh2_kg.8__503__AT5G43175.1 Arabidopsis lyrata fgenesh2_kg.8__503__AT5G43175.1 N
gene02560-v1.0-hybrid Fragaria vesca gene02560-v1.0-hybrid N
gene25555-v1.0-hybrid Fragaria vesca gene25555-v1.0-hybrid N
GLYMA04G04801 Glycine max GLYMA04G04801 N
GLYMA10G40350 Glycine max GLYMA10G40350 N
GLYMA10G40360 Glycine max GLYMA10G40360 N
GLYMA14G09781 Glycine max GLYMA14G09781 N
GLYMA17G35423 Glycine max GLYMA17G35423 N
GLYMA20G26980 Glycine max GLYMA20G26980 N
GLYMA20G26991 Glycine max GLYMA20G26991 N
Gorai.005G231900 Gossypium raimondii Gorai.005G231900 N
Gorai.009G219100 Gossypium raimondii Gorai.009G219100 N
Gorai.010G025400 Gossypium raimondii Gorai.010G025400 N
GRMZM2G057260 Zea mays GRMZM2G057260 N
GRMZM2G383841 Zea mays GRMZM2G383841 N
GRMZM2G395549 Zea mays GRMZM2G395549 N
GSMUA_Achr2G17130_001 Musa acuminata GSMUA_Achr2G17130_001 N
GSMUA_Achr3G18870_001 Musa acuminata GSMUA_Achr3G18870_001 N
GSMUA_Achr4G23240_001 Musa acuminata GSMUA_Achr4G23240_001 N
GSMUA_Achr6G07760_001 Musa acuminata GSMUA_Achr6G07760_001 N
GSMUA_Achr6G16890_001 Musa acuminata GSMUA_Achr6G16890_001 N
GSMUA_Achr9G09600_001 Musa acuminata GSMUA_Achr9G09600_001 N
GSMUA_AchrUn_randomG07080_001 Musa acuminata GSMUA_AchrUn_randomG07080_001 N
LPERR03G21650 Leersia perrieri LPERR03G21650 N
LPERR07G17840 Leersia perrieri LPERR07G17840 N
LPERR11G16970 Leersia perrieri LPERR11G16970 N
LPERR12G11190 Leersia perrieri LPERR12G11190 N
LPERR12G14550 Leersia perrieri LPERR12G14550 N
Lus10004315.g Linum usitatissimum Lus10004315.g N
MDP0000131874 Malus domestica MDP0000131874 N
MDP0000145825 Malus domestica MDP0000145825 N
MDP0000198037 Malus domestica MDP0000198037 N
MDP0000573178 Malus domestica MDP0000573178 N
MDP0000946515 Malus domestica MDP0000946515 N
mgf018282m Mimulus guttatus mgf018282m N
mgf019332m Mimulus guttatus mgf019332m N
mgf022238m Mimulus guttatus mgf022238m N
mgf024863m Mimulus guttatus mgf024863m N
MLOC_60270 Hordeum vulgare MLOC_60270 N
MLOC_67369 Hordeum vulgare MLOC_67369 N
MLOC_74022 Hordeum vulgare MLOC_74022 N
MLOC_76486 Hordeum vulgare MLOC_76486 N
MTR_1g018090 Medicago truncatula MTR_1g018090 N
MTR_1g106460 Medicago truncatula MTR_1g106460 N
MTR_1g106480 Medicago truncatula MTR_1g106480 N
MTR_3g103030 Medicago truncatula MTR_3g103030 N
MTR_5g005110 Medicago truncatula MTR_5g005110 N
OB03G17860 Oryza brachyantha OB03G17860 N
OB03G34210 Oryza brachyantha OB03G34210 N
OB07G26210 Oryza brachyantha OB07G26210 N
OB12G24200 Oryza brachyantha OB12G24200 N
OBART03G07520 Oryza barthii OBART03G07520 N
OBART03G26170 Oryza barthii OBART03G26170 N
OBART12G17400 Oryza barthii OBART12G17400 N
OGLUM03G07680 Oryza glumaepatula OGLUM03G07680 N
OGLUM03G27050 Oryza glumaepatula OGLUM03G27050 N
OGLUM07G20330 Oryza glumaepatula OGLUM07G20330 N
OGLUM09G03740 Oryza glumaepatula OGLUM09G03740 N
OLONG_006157 Oryza longistaminata OLONG_006157 N
OLONG_008046 Oryza longistaminata OLONG_008046 N
OLONG_010636 Oryza longistaminata OLONG_010636 N
OLONG_014997 Oryza longistaminata OLONG_014997 N
OMERI03G07360 Oryza meridionalis OMERI03G07360 N
OMERI03G23570 Oryza meridionalis OMERI03G23570 N
OMERI07G17220 Oryza meridionalis OMERI07G17220 N
OMERI12G12030 Oryza meridionalis OMERI12G12030 N
ONIVA03G07980 Oryza nivara ONIVA03G07980 N
ONIVA03G27180 Oryza nivara ONIVA03G27180 N
ONIVA07G18960 Oryza nivara ONIVA07G18960 N
ONIVA12G13790 Oryza nivara ONIVA12G13790 N
ONIVA12G15960 Oryza nivara ONIVA12G15960 N
OPUNC03G07300 Oryza punctata OPUNC03G07300 N
OPUNC03G23870 Oryza punctata OPUNC03G23870 N
OPUNC07G19390 Oryza punctata OPUNC07G19390 N
OPUNC12G15720 Oryza punctata OPUNC12G15720 N
orange1.1g036928m.g Citrus sinensis orange1.1g036928m.g N
orange1.1g047654m.g Citrus sinensis orange1.1g047654m.g N
ORGLA03G0073500 Oryza glaberrima ORGLA03G0073500 N
ORGLA03G0242600 Oryza glaberrima ORGLA03G0242600 N
ORGLA12G0149000 Oryza glaberrima ORGLA12G0149000 N
ORUFI03G07580 Oryza rufipogon ORUFI03G07580 N
ORUFI03G27070 Oryza rufipogon ORUFI03G27070 N
ORUFI07G21430 Oryza rufipogon ORUFI07G21430 N
ORUFI12G19280 Oryza rufipogon ORUFI12G19280 N
OS03G0205300 Oryza sativa OS03G0205300 N
OS07G0588400 Oryza sativa OS07G0588400 N
OS12G0589000 Oryza sativa OS12G0589000 N
Pavir.Ba01059 Panicum virgatum Pavir.Ba01059 N
Pavir.Bb01173 Panicum virgatum Pavir.Bb01173 N
Pavir.Ia00352 Panicum virgatum Pavir.Ia00352 N
Pavir.Ia04640 Panicum virgatum Pavir.Ia04640 N
Pavir.Ib00696 Panicum virgatum Pavir.Ib00696 N
Pavir.J00626 Panicum virgatum Pavir.J00626 N
PGSC0003DMG400021526 Solanum tuberosum PGSC0003DMG400021526 N
PGSC0003DMG400036714 Solanum tuberosum PGSC0003DMG400036714 N
PGSC0003DMG400039299 Solanum tuberosum PGSC0003DMG400039299 N
PK01802.1 Cannabis sativa PK01802.1 N
Pm005392 Prunus mume Pm005392 N
Pm021172 Prunus mume Pm021172 N
POPTR_0001s30150 Populus trichocarpa POPTR_0001s30150 N
POPTR_0002s12000 Populus trichocarpa POPTR_0002s12000 N
POPTR_0009s09210 Populus trichocarpa POPTR_0009s09210 N
POPTR_0014s01730 Populus trichocarpa POPTR_0014s01730 N
PRUPE_ppa015160mg Prunus persica PRUPE_ppa015160mg N
SapurV1A.0005s0400 Salix purpurea SapurV1A.0005s0400 N
SapurV1A.0019s0320 Salix purpurea SapurV1A.0019s0320 N
SapurV1A.0476s0200 Salix purpurea SapurV1A.0476s0200 N
SapurV1A.0845s0110 Salix purpurea SapurV1A.0845s0110 N
SapurV1A.2301s0020 Salix purpurea SapurV1A.2301s0020 N
Sb01g007160 Sorghum bicolor Sb01g007160 N
Sb02g037990 Sorghum bicolor Sb02g037990 N
Sb05g025230 Sorghum bicolor Sb05g025230 N
SELMODRAFT_404767 Selaginella moellendorffii SELMODRAFT_404767 N
SELMODRAFT_419388 Selaginella moellendorffii SELMODRAFT_419388 N
Si032445m.g Setaria italica Si032445m.g N
Si039720m.g Setaria italica Si039720m.g N
Solyc01g107140.1 Solanum lycopersicum Solyc01g107140.1 N
Solyc04g077960.1 Solanum lycopersicum Solyc04g077960.1 N
TCM_007220 Theobroma cacao TCM_007220 N
TCM_034717 Theobroma cacao TCM_034717 N
Thhalv10003393m.g Eutrema salsugineum Thhalv10003393m.g N
Thhalv10009862m.g Eutrema salsugineum Thhalv10009862m.g N
Thhalv10026786m.g Eutrema salsugineum Thhalv10026786m.g N
Traes_2AS_9A3F73BE3 Triticum aestivum Traes_2AS_9A3F73BE3 N
Traes_2BS_659F9ABB9 Triticum aestivum Traes_2BS_659F9ABB9 N
Traes_2DS_7C9C33E09 Triticum aestivum Traes_2DS_7C9C33E09 N
Traes_4AL_6A6EC9A6A Triticum aestivum Traes_4AL_6A6EC9A6A N
Traes_4AS_7530AAEB4 Triticum aestivum Traes_4AS_7530AAEB4 N
Traes_4BS_9BFCC52AD Triticum aestivum Traes_4BS_9BFCC52AD N
Traes_4DL_61AE80723 Triticum aestivum Traes_4DL_61AE80723 N
Traes_4DS_7488F4608 Triticum aestivum Traes_4DS_7488F4608 N
Traes_5AS_5B9D5E067 Triticum aestivum Traes_5AS_5B9D5E067 N
Traes_5BL_E1D1D198E Triticum aestivum Traes_5BL_E1D1D198E N
Traes_5BS_0F8DBB33D Triticum aestivum Traes_5BS_0F8DBB33D N
Traes_5DS_51467BEB4 Triticum aestivum Traes_5DS_51467BEB4 N
TRIUR3_01454 Triticum urartu TRIUR3_01454 N
TRIUR3_17670 Triticum urartu TRIUR3_17670 N
TRIUR3_24341 Triticum urartu TRIUR3_24341 N
VIT_03s0091g00730 Vitis vinifera VIT_03s0091g00730 N
VIT_18s0001g09210 Vitis vinifera VIT_18s0001g09210 N