Sjc_0090760 (Schistosoma japonicum)
GCM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03615 (GCM) IPR003902 Sjc_0090760 T198190_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
gcm
M03764_2.00 		Drosophila melanogaster
HATGCGGGYVVBRCCCGCATV
BATGCGGGYVBBRCCCGCATD		 SELEX
Nitta et al.(2015)
gcm_1 		0.664 0.664
gcm
M03765_2.00 		Drosophila melanogaster
VATGCKGGYRCCMGCATV
BATGCKGGYRCCMGCATB		 SELEX
Nitta et al.(2015)
gcm_2 		0.664 0.664
gcm
M03766_2.00 		Drosophila melanogaster
YATGCGGGTACCAGCATV
BATGCTGGTACCCGCATR		 SELEX
Nitta et al.(2015)
gcm_3 		0.664 0.664
gcm
M10605_2.00 		Drosophila melanogaster
NDNATGCGGGYNB
VNRCCCGCATNHN		 Transfac
Matys et al.(2006)
I$GCM_01 		0.664 0.664
For this family, TFs with SR scores > 0.607 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
CPRT0000008538 GCM 247 376

Links

Other GCM family TFs
Other Schistosoma japonicum TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AT1G17310 Arabidopsis thaliana AT1G17310 N
AT1G72350 Arabidopsis thaliana AT1G72350 N
Bo6g091550 Brassica oleracea Bo6g091550 N
Bo6g115840 Brassica oleracea Bo6g115840 N
Bo8g104960 Brassica oleracea Bo8g104960 N
Bostr.10273s0116 Boechera stricta Bostr.10273s0116 N
Bostr.7128s0342 Boechera stricta Bostr.7128s0342 N
Bra003884 Brassica rapa Bra003884 N
Bra026674 Brassica rapa Bra026674 N
Cagra.1013s0063 Capsella grandiflora Cagra.1013s0063 N
Carubv10011075m.g Capsella rubella Carubv10011075m.g N
Carubv10021825m.g Capsella rubella Carubv10021825m.g N
fgenesh2_kg.1__1889__AT1G17310.1 Arabidopsis lyrata fgenesh2_kg.1__1889__AT1G17310.1 N
scaffold_202161.1 Arabidopsis lyrata scaffold_202161.1 N
Thhalv10009669m.g Eutrema salsugineum Thhalv10009669m.g N
Thhalv10019133m.g Eutrema salsugineum Thhalv10019133m.g N