Carubv10003592m.g (Capsella rubella)
GRAS

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03514 (GRAS) IPR005202 Carubv10003592m.g T202340_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RGL2
M02031_2.00 		Arabidopsis thaliana
NGTACGGHN
NDCCGTACN		 PBM
Weirauch et al.(2014)
pTH8681 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10003592m GRAS 167 526

Links

Other GRAS family TFs
Other Capsella rubella TFs

14 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RGL2 Arabidopsis thaliana AT3G03450 D 0.758
RGL3 Arabidopsis thaliana AT5G17490 I 0.919
Bo5g149920 Brassica oleracea Bo5g149920 I 0.763
Bo9g160170 Brassica oleracea Bo9g160170 I 0.880
Bostr.19046s0061 Boechera stricta Bostr.19046s0061 I 0.774
Bostr.26527s0463 Boechera stricta Bostr.26527s0463 I 0.911
Bra013973 Brassica rapa Bra013973 I 0.885
Cagra.2098s0043 Capsella grandiflora Cagra.2098s0043 I 0.765
Cagra.6170s0019 Capsella grandiflora Cagra.6170s0019 I 0.997
Carubv10015212m.g Capsella rubella Carubv10015212m.g I 0.769
RGL2 Arabidopsis lyrata fgenesh2_kg.3__292__AT3G03450.1 I 0.746
RGL3 Arabidopsis lyrata fgenesh2_kg.6__1749__AT5G17490.1 I 0.916
Thhalv10015535m.g Eutrema salsugineum Thhalv10015535m.g I 0.858
Thhalv10020431m.g Eutrema salsugineum Thhalv10020431m.g I 0.760