ENSPCAG00000016266 (Procavia capensis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSPCAG00000016266 T214319_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Six2
M00425_2.00 		Mus musculus
NNAYMYNN
NNRKRTNN		 PBM
Berger et al.(2008)
Six2_2307 		0.867 1.000
SIX2
M05285_2.00 		Homo sapiens
NNYGATACSB
VSGTATCRNN		 SELEX
Yin et al.(2017)
SIX2_eDBD_HT-SELEX 		0.867 1.000
SIX2
M05287_2.00 		Homo sapiens
NSGTRWCRYN
NRYGWYACSN		 SELEX
Yin et al.(2017)
SIX2_FL_HT-SELEX 		0.867 1.000
SIX2
M08133_2.00 		Homo sapiens
NNNTGWAACCTGAKMH
DKMTCAGGTTWCANNN		 ChIP-seq
Mathelier et al.(2014)
MA1119.1 		0.867 1.000
SIX2
M09157_2.00 		Homo sapiens
DGWAAYHHGABMH
DKVTCDDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_HUMAN.H11MO.0.A 		0.867 1.000
Six2
M09185_2.00 		Mus musculus
DGWAAYHYRABMYB
VRKVTYRDRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX2_MOUSE.H11MO.0.A 		0.867 1.000
SIX2
M05286_2.00 		Homo sapiens
NBRTATCRNN
NNYGATAYVN		 SELEX
Yin et al.(2017)
SIX2_eDBD_Methyl-HT-SELEX 		0.867 1.000
SIX2
M05288_2.00 		Homo sapiens
VBRTAWCRNN
NNYGWTAYVB		 SELEX
Yin et al.(2017)
SIX2_FL_Methyl-HT-SELEX 		0.867 1.000
so
M02117_2.00 		Drosophila melanogaster
NDATMYNNN
NNNRKATHN		 PBM
Weirauch et al.(2014)
pTH5690 		0.866 0.945
so
M03800_2.00 		Drosophila melanogaster
NYGATAYB
VRTATCRN		 SELEX
Nitta et al.(2015)
so_1 		0.866 0.945
so
M03801_2.00 		Drosophila melanogaster
YKATAYNNNYGATAY
RTATCRNNNRTATMR		 SELEX
Nitta et al.(2015)
so_2 		0.866 0.945
so
M03802_2.00 		Drosophila melanogaster
YGATACGTATCR
YGATACGTATCR		 SELEX
Nitta et al.(2015)
so_3 		0.866 0.945
so
M03803_2.00 		Drosophila melanogaster
RTATCRYGATAC
GTATCRYGATAY		 SELEX
Nitta et al.(2015)
so_4 		0.866 0.945
so
M06497_2.00 		Drosophila melanogaster
TGATAC
GTATCA		 B1H
Mathelier et al.(2014)
MA0246.1 		0.866 0.945
so
M06268_2.00 		Drosophila melanogaster
NRTGATA
TATCAYN		 B1H
Zhu et al.(2011)
So_Cell_FBgn0003460 		0.866 0.945
so
M06269_2.00 		Drosophila melanogaster
NNNTGATA
TATCANNN		 B1H
Zhu et al.(2011)
So_SOLEXA_FBgn0003460 		0.866 0.945
Six1
M00512_2.00 		Mus musculus
NNDATMYNNN
NNNRKATHNN		 PBM
Berger et al.(2008)
Six1_0935 		0.865 0.982
SIX1
M05094_2.00 		Homo sapiens
NNYGATACVB
VBGTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_HT-SELEX 		0.865 0.982
SIX1
M05096_2.00 		Homo sapiens
NNYGATAYVB
VBRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_HT-SELEX 		0.865 0.982
SIX1
M08130_2.00 		Homo sapiens
GWAACCTGANM
KNTCAGGTTWC		 ChIP-seq
Mathelier et al.(2014)
MA1118.1 		0.865 0.982
SIX1
M09142_2.00 		Homo sapiens
DGWAAYHTGABMYN
NRKVTCADRTTWCH		 Misc
Kulakovskiy et al.(2013)
SIX1_HUMAN.H11MO.0.A 		0.865 0.982
Six1
M09579_2.00 		Mus musculus
GWAAYHTGABMH
DKVTCADRTTWC		 Misc
Heinz et al.(2010)
Myoblast-Six1_GSE20150 		0.865 0.982
SIX1
M10684_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3_01 		0.865 0.982
SIX1
M10685_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX1_Q3 		0.865 0.982
SIX1
M05095_2.00 		Homo sapiens
NNYGATABNB
VNVTATCRNN		 SELEX
Yin et al.(2017)
SIX1_eDBD_Methyl-HT-SELEX 		0.865 0.982
SIX1
M05097_2.00 		Homo sapiens
NNYGATAYSB
VSRTATCRNN		 SELEX
Yin et al.(2017)
SIX1_FL_Methyl-HT-SELEX 		0.865 0.982
Six4
M00461_2.00 		Mus musculus
NNKABMHNN
NNDKVTMNN		 PBM
Berger et al.(2008)
Six4_2860 		0.708 0.709
SIX4
M04939_2.00 		Homo sapiens
NVYGATACVB
VBGTATCRBN		 SELEX
Yin et al.(2017)
SIX4_eDBD_HT-SELEX 		0.708 0.709
Six4
M09198_2.00 		Mus musculus
DGDAABHNSASNNN
NNNSTSNDVTTHCH		 Misc
Kulakovskiy et al.(2013)
SIX4_MOUSE.H11MO.0.C 		0.708 0.709
SIX4
M10646_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX4_Q3 		0.708 0.709
SIX4
M04940_2.00 		Homo sapiens
NBGTAWCRHN
NDYGWTACVN		 SELEX
Yin et al.(2017)
SIX4_eDBD_Methyl-HT-SELEX 		0.708 0.709
Six4
M00563_2.00 		Drosophila melanogaster
NNDANMHNN
NNDKNTHNN		 PBM
Busser et al.(2012a)
Six4 		0.708 0.673
Six4
M06530_2.00 		Drosophila melanogaster
TGABAC
GTVTCA		 B1H
Mathelier et al.(2014)
MA0204.1 		0.708 0.673
Six4
M06334_2.00 		Drosophila melanogaster
WDDTGABAC
GTVTCAHHW		 B1H
Zhu et al.(2011)
Six4_Cell_FBgn0027364 		0.708 0.673
Six4
M06335_2.00 		Drosophila melanogaster
NTGAKACB
VGTMTCAN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_2_FBgn0027364 		0.708 0.673
Six4
M06336_2.00 		Drosophila melanogaster
NNNTGABA
TVTCANNN		 B1H
Zhu et al.(2011)
Six4_SOLEXA_FBgn0027364 		0.708 0.673
SIX5
M08208_2.00 		Homo sapiens
GARWTGTAGT
ACTACAWYTC		 ChIP-seq
Contrino et al.(2012)
Mv121 		0.708 0.655
SIX5
M08209_2.00 		Homo sapiens
GGAGTTGT
ACAACTCC		 ChIP-seq
Contrino et al.(2012)
Mv123 		0.708 0.655
SIX5
M10738_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_01 		0.708 0.655
SIX5
M10739_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SIX5_02 		0.708 0.655
ceh-34
M00672_2.00 		Caenorhabditis elegans
NNNRDAWNNN
NNNWTHYNNN		 PBM
Narasimhan et al.(2015)
pTH9708 		0.664 0.618
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSPCAP00000015178 Homeodomain 127 181

Links

Other Homeodomain family TFs
Other Procavia capensis TFs

540 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29838.m001724 Ricinus communis 29838.m001724 I
Aquca_007_00522 Aquilegia coerulea Aquca_007_00522 I
Aquca_010_00250 Aquilegia coerulea Aquca_010_00250 I
Aquca_018_00034 Aquilegia coerulea Aquca_018_00034 I
GATA28 Arabidopsis thaliana AT1G51600 D
GATA24 Arabidopsis thaliana AT3G21175 D
ZIM Arabidopsis thaliana AT4G24470 D
BGIOSGA007539 Oryza indica BGIOSGA007539 I
BGIOSGA020596 Oryza indica BGIOSGA020596 I
Bo1g039000 Brassica oleracea Bo1g039000 I
Bo1g108240 Brassica oleracea Bo1g108240 I
Bo3g181450 Brassica oleracea Bo3g181450 I
Bo5g103560 Brassica oleracea Bo5g103560 I
Bostr.26675s0048 Boechera stricta Bostr.26675s0048 I
Bostr.7867s0254 Boechera stricta Bostr.7867s0254 I
Bra013805 Brassica rapa Bra013805 I
Bra014292 Brassica rapa Bra014292 I
Bra023900 Brassica rapa Bra023900 I
Bra031258 Brassica rapa Bra031258 I
BRADI1G33980 Brachypodium distachyon BRADI1G33980 I
BRADI3G03800 Brachypodium distachyon BRADI3G03800 I
Cagra.1757s0004 Capsella grandiflora Cagra.1757s0004 I
Cagra.2171s0014 Capsella grandiflora Cagra.2171s0014 I
Cagra.2346s0015 Capsella grandiflora Cagra.2346s0015 I
Carubv10006355m.g Capsella rubella Carubv10006355m.g I
Carubv10016131m.g Capsella rubella Carubv10016131m.g I
cassava12169.valid.m1 Manihot esculenta cassava12169.valid.m1 I
cassava6876.valid.m1 Manihot esculenta cassava6876.valid.m1 I
Ca_01471 Cicer arietinum Ca_01471 I
Ca_17522 Cicer arietinum Ca_17522 I
Ciclev10027306m.g Citrus clementina Ciclev10027306m.g I
Cla013127 Citrullus lanatus Cla013127 I
Cla015736 Citrullus lanatus Cla015736 I
Cucsa.218190 Cucumis sativus Cucsa.218190 I
Cucsa.359570 Cucumis sativus Cucsa.359570 I
Eucgr.J03166 Eucalyptus grandis Eucgr.J03166 I
evm.TU.supercontig_155.28 Carica papaya evm.TU.supercontig_155.28 I
e_gw1.226.30.1 Physcomitrella patens e_gw1.226.30.1 I
F775_08559 Aegilops tauschii F775_08559 I
fgenesh1_pm.scaffold_69000012 Physcomitrella patens fgenesh1_pm.scaffold_69000012 I
ZML1 Arabidopsis lyrata fgenesh2_kg.3__2338__AT3G21175.1 I
TIFY1 Arabidopsis lyrata fgenesh2_kg.7__1832__AT4G24470.2 I
fgenesh2_pm.scaffold_111000001 Physcomitrella patens fgenesh2_pm.scaffold_111000001 I
GLYMA08G23720 Glycine max GLYMA08G23720 I
Gorai.008G017800 Gossypium raimondii Gorai.008G017800 I
GRMZM2G058479 Zea mays GRMZM2G058479 I
GRMZM2G080509 Zea mays GRMZM2G080509 I
GSMUA_Achr10G06260_001 Musa acuminata GSMUA_Achr10G06260_001 I
GSMUA_Achr2G04520_001 Musa acuminata GSMUA_Achr2G04520_001 I
GSMUA_Achr3G05620_001 Musa acuminata GSMUA_Achr3G05620_001 I
GSMUA_Achr7G08720_001 Musa acuminata GSMUA_Achr7G08720_001 I
GSMUA_Achr9G13870_001 Musa acuminata GSMUA_Achr9G13870_001 I
gw1.68.123.1 Physcomitrella patens gw1.68.123.1 I
LjSGA_067759.1 Lotus japonicus LjSGA_067759.1 I
LPERR02G03330 Leersia perrieri LPERR02G03330 I
LPERR06G21800 Leersia perrieri LPERR06G21800 I
LPERR11G14110 Leersia perrieri LPERR11G14110 I
mgf016112m Mimulus guttatus mgf016112m I
MLOC_17061 Hordeum vulgare MLOC_17061 I
MLOC_3107 Hordeum vulgare MLOC_3107 I
MTR_3g100050 Medicago truncatula MTR_3g100050 I
MTR_4g008070 Medicago truncatula MTR_4g008070 I
OB02G13220 Oryza brachyantha OB02G13220 I
OB06G33840 Oryza brachyantha OB06G33840 I
OBART02G03780 Oryza barthii OBART02G03780 I
OBART06G26250 Oryza barthii OBART06G26250 I
OGLUM02G03560 Oryza glumaepatula OGLUM02G03560 I
OGLUM06G27650 Oryza glumaepatula OGLUM06G27650 I
OLONG_015069 Oryza longistaminata OLONG_015069 I
OMERI02G04610 Oryza meridionalis OMERI02G04610 I
OMERI06G26410 Oryza meridionalis OMERI06G26410 I
ONIVA02G03810 Oryza nivara ONIVA02G03810 I
ONIVA06G28780 Oryza nivara ONIVA06G28780 I
OPUNC02G02970 Oryza punctata OPUNC02G02970 I
OPUNC06G23830 Oryza punctata OPUNC06G23830 I
orange1.1g022728m.g Citrus sinensis orange1.1g022728m.g I
ORGLA02G0035000 Oryza glaberrima ORGLA02G0035000 I
ORGLA06G0219100 Oryza glaberrima ORGLA06G0219100 I
ORUFI02G03830 Oryza rufipogon ORUFI02G03830 I
ORUFI06G28170 Oryza rufipogon ORUFI06G28170 I
GATA17 Oryza sativa OS02G0148500 I
OS06G0698900 Oryza sativa OS06G0698900 D
Pavir.Da00166 Panicum virgatum Pavir.Da00166 I
Pavir.Db00254 Panicum virgatum Pavir.Db00254 I
PDK_20s1340921g001 Phoenix dactylifera PDK_20s1340921g001 I
PDK_20s1879741g001 Phoenix dactylifera PDK_20s1879741g001 I
PK11000.1 Cannabis sativa PK11000.1 I
Pm013048 Prunus mume Pm013048 I
Pm022163 Prunus mume Pm022163 I
POPTR_0007s03130 Populus trichocarpa POPTR_0007s03130 I
POPTR_0010s25810 Populus trichocarpa POPTR_0010s25810 I
POPTR_0017s06980 Populus trichocarpa POPTR_0017s06980 I
PRUPE_ppa009401mg Prunus persica PRUPE_ppa009401mg I
PRUPE_ppa009709mg Prunus persica PRUPE_ppa009709mg I
SapurV1A.0036s1170 Salix purpurea SapurV1A.0036s1170 I
SapurV1A.0187s0150 Salix purpurea SapurV1A.0187s0150 I
Sb10g028750 Sorghum bicolor Sb10g028750 I
ZML2 Arabidopsis lyrata scaffold_104929.1 I
SELMODRAFT_177195 Selaginella moellendorffii SELMODRAFT_177195 I
SELMODRAFT_423855 Selaginella moellendorffii SELMODRAFT_423855 I
Si006750m.g Setaria italica Si006750m.g I
TCM_007360 Theobroma cacao TCM_007360 I
TCM_027858 Theobroma cacao TCM_027858 I
Thhalv10011695m.g Eutrema salsugineum Thhalv10011695m.g I
Thhalv10020970m.g Eutrema salsugineum Thhalv10020970m.g I
Thhalv10025795m.g Eutrema salsugineum Thhalv10025795m.g I
Traes_6AS_4106E8E28 Triticum aestivum Traes_6AS_4106E8E28 I
Traes_6BS_AB5909D02 Triticum aestivum Traes_6BS_AB5909D02 I
Traes_6DS_6268D31AE Triticum aestivum Traes_6DS_6268D31AE I
Traes_7AL_EA6F4FFDE Triticum aestivum Traes_7AL_EA6F4FFDE I
Traes_7DL_A5ECEDA95 Triticum aestivum Traes_7DL_A5ECEDA95 I
TRIUR3_11107 Triticum urartu TRIUR3_11107 I
TRIUR3_32095 Triticum urartu TRIUR3_32095 I
VIT_09s0054g00440 Vitis vinifera VIT_09s0054g00440 I