GSMUA_Achr4G28360_001 (Musa acuminata)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 GSMUA_Achr4G28360_001 T219160_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ATHB-9
M06898_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
PHV_col_a 		0.866 0.964
ATHB-9
M02682_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 SELEX
Mathelier et al.(2014)
MA0573.1 		0.866 0.964
ATHB-9
M10623_2.00 		Arabidopsis thaliana
HNHHGTAATGATTRCDYBS
SVRHGYAATCATTACDDND		 Transfac
Matys et al.(2006)
P$ATHB9_01 		0.866 0.964
ATHB-15
M00864_2.00 		Arabidopsis thaliana
AATAATTACT
AGTAATTATT		 PBM
Franco-Zorrilla et al.(2014)
ICU4 		0.861 0.929
ATHB-15
M06899_2.00 		Arabidopsis thaliana
DWWDRTAATGATKAH
DTMATCATTAYHWWH		 Dap-seq
OMalley et al.(2016)
ATHB15_col_a 		0.861 0.929
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GSMUA_Achr4P28360_001 Homeodomain 23 82

Links

Other Homeodomain family TFs
Other Musa acuminata TFs

335 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_010_00154 Aquilegia coerulea Aquca_010_00154 N 0.000
AT2G44730 Arabidopsis thaliana AT2G44730 N 0.000
Bo3g037360 Brassica oleracea Bo3g037360 N 0.000
Bo4g023990 Brassica oleracea Bo4g023990 N 0.000
Bostr.25993s0300 Boechera stricta Bostr.25993s0300 N 0.000
Bra000360 Brassica rapa Bra000360 N 0.000
Bra004859 Brassica rapa Bra004859 N 0.000
Cagra.0239s0022 Capsella grandiflora Cagra.0239s0022 N 0.000
Carubv10025047m.g Capsella rubella Carubv10025047m.g N 0.000
cassava12982.valid.m1 Manihot esculenta cassava12982.valid.m1 N 0.000
Ca_06067 Cicer arietinum Ca_06067 N 0.000
Ca_06795 Cicer arietinum Ca_06795 N 0.000
chr4.CM0739.40.nd Lotus japonicus chr4.CM0739.40.nd N 0.000
Ciclev10020863m.g Citrus clementina Ciclev10020863m.g N 0.000
Cla021714 Citrullus lanatus Cla021714 N 0.000
Cucsa.078220 Cucumis sativus Cucsa.078220 N 0.000
Cucsa.256710 Cucumis sativus Cucsa.256710 N 0.000
evm.TU.supercontig_41.83 Carica papaya evm.TU.supercontig_41.83 N 0.000
fgenesh2_kg.4__2662__AT2G44730.1 Arabidopsis lyrata fgenesh2_kg.4__2662__AT2G44730.1 N 0.000
gene05318-v1.0-hybrid Fragaria vesca gene05318-v1.0-hybrid N 0.000
GLYMA08G05630 Glycine max GLYMA08G05630 N 0.000
GLYMA09G38050 Glycine max GLYMA09G38050 N 0.000
GLYMA18G48343 Glycine max GLYMA18G48343 N 0.000
Gorai.001G233700 Gossypium raimondii Gorai.001G233700 N 0.000
Gorai.004G167100 Gossypium raimondii Gorai.004G167100 N 0.000
GRMZM2G379179 Zea mays GRMZM2G379179 N 0.000
GRMZM5G850092 Zea mays GRMZM5G850092 N 0.000
GSMUA_Achr11G17710_001 Musa acuminata GSMUA_Achr11G17710_001 N 0.000
MDP0000158598 Malus domestica MDP0000158598 N 0.000
MDP0000271048 Malus domestica MDP0000271048 N 0.000
MDP0000557282 Malus domestica MDP0000557282 N 0.000
mgf005560m Mimulus guttatus mgf005560m N 0.000
MTR_4g117990 Medicago truncatula MTR_4g117990 N 0.000
MTR_7g081190 Medicago truncatula MTR_7g081190 N 0.000
orange1.1g018620m.g Citrus sinensis orange1.1g018620m.g N 0.000
PGSC0003DMG400001696 Solanum tuberosum PGSC0003DMG400001696 N 0.000
PK17306.1 Cannabis sativa PK17306.1 N 0.000
POPTR_0002s14030 Populus trichocarpa POPTR_0002s14030 N 0.000
POPTR_0014s05010 Populus trichocarpa POPTR_0014s05010 N 0.000
SapurV1A.0033s0070 Salix purpurea SapurV1A.0033s0070 N 0.000
Solyc01g088820.2 Solanum lycopersicum Solyc01g088820.2 N 0.000
TCM_005773 Theobroma cacao TCM_005773 N 0.000
Thhalv10001488m.g Eutrema salsugineum Thhalv10001488m.g N 0.000
VIT_15s0021g01220 Vitis vinifera VIT_15s0021g01220 N 0.000