TCM_040945 (Theobroma cacao)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 TCM_040945 T223942_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK25011.1
M01253_2.00 		Cannabis sativa
NNWYRMDBNN
NNVHKYRWNN		 PBM
Lambert et al.(2019)
pTH11258 		0.668 0.737
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EOY32926 Homeodomain 50 106
EOY32927 Homeodomain 19 75
EOY32928 Homeodomain 19 75
EOY32929 Homeodomain 19 75

Links

Other Homeodomain family TFs
Other Theobroma cacao TFs

26 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_014_00610 Aquilegia coerulea Aquca_014_00610 I 0.700
AT4G03250 Arabidopsis thaliana AT4G03250 I 0.624
Bo9g006450 Brassica oleracea Bo9g006450 I 0.626
Bostr.2983s0116 Boechera stricta Bostr.2983s0116 I 0.630
Bra034196 Brassica rapa Bra034196 I 0.626
Cagra.2552s0003 Capsella grandiflora Cagra.2552s0003 I 0.630
Carubv10002996m.g Capsella rubella Carubv10002996m.g I 0.630
cassava16534.m1 Manihot esculenta cassava16534.m1 I 0.613
Cla008712 Citrullus lanatus Cla008712 I 0.621
Cucsa.087050 Cucumis sativus Cucsa.087050 I 0.608
GLYMA02G44910 Glycine max GLYMA02G44910 I 0.609
GLYMA04G15260 Glycine max GLYMA04G15260 I 0.609
GLYMA14G03850 Glycine max GLYMA14G03850 I 0.609
Gorai.001G134800 Gossypium raimondii Gorai.001G134800 I 0.698
Gorai.004G014700 Gossypium raimondii Gorai.004G014700 I 0.832
Gorai.013G254100 Gossypium raimondii Gorai.013G254100 I 0.800
MDP0000207866 Malus domestica MDP0000207866 I 0.625
mgf007720m Mimulus guttatus mgf007720m I 0.643
PK25011.1 Cannabis sativa PK25011.1 D 0.668
POPTR_0001s28350 Populus trichocarpa POPTR_0001s28350 I 0.797
POPTR_0009s07600 Populus trichocarpa POPTR_0009s07600 I 0.809
PRUPE_ppa005223mg Prunus persica PRUPE_ppa005223mg I 0.618
SapurV1A.0042s0570 Salix purpurea SapurV1A.0042s0570 I 0.777
SapurV1A.0106s0340 Salix purpurea SapurV1A.0106s0340 I 0.809
VIT_06s0009g03530 Vitis vinifera VIT_06s0009g03530 I 0.638