RSKR_0001035725 (Rhabditophanes kr3021)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 RSKR_0001035725 T235879_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
VSX1
M03087_2.00 		Homo sapiens
YTAATTAN
NTAATTAR		 SELEX
Jolma et al.(2013)
VSX1_1 		0.721 0.435
VSX1
M03088_2.00 		Homo sapiens
NNYAATTRRBN
NVYYAATTRNN		 SELEX
Jolma et al.(2013)
VSX1_2 		0.721 0.435
VSX1
M04941_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_HT-SELEX 		0.721 0.435
VSX1
M04944_2.00 		Homo sapiens
NTAATTRS
SYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_HT-SELEX 		0.721 0.435
VSX1
M05869_2.00 		Homo sapiens
DGCTAATTAN
NTAATTAGCH		 SMiLE-seq
Isakova et al.(2017)
VSX1 		0.721 0.435
VSX1
M04942_2.00 		Homo sapiens
NTAAYGMN
NKCRTTAN		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_1 		0.721 0.435
VSX1
M04943_2.00 		Homo sapiens
YYAATTRN
NYAATTRR		 SELEX
Yin et al.(2017)
VSX1_eDBD_Methyl-HT-SELEX_2 		0.721 0.435
VSX1
M04945_2.00 		Homo sapiens
NTAATTRG
CYAATTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_1 		0.721 0.435
VSX1
M04946_2.00 		Homo sapiens
NTAAYGAN
NTCRTTAN		 SELEX
Yin et al.(2017)
VSX1_FL_Methyl-HT-SELEX_2 		0.721 0.435
VAX1
M03168_2.00 		Homo sapiens
YTAATKAN
NTMATTAR		 SELEX
Jolma et al.(2013)
VAX1_1 		0.678 0.413
VAX1
M05182_2.00 		Homo sapiens
BTAATTRN
NYAATTAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_HT-SELEX 		0.678 0.413
VAX1
M05183_2.00 		Homo sapiens
BTMATKRN
NYMATKAV		 SELEX
Yin et al.(2017)
VAX1_eDBD_Methyl-HT-SELEX 		0.678 0.413
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
RSKR_0001035725.1 Homeodomain 153 198

Links

Other Homeodomain family TFs
Other Rhabditophanes kr3021 TFs

1229 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BGIOSGA009862 Oryza indica BGIOSGA009862 N
BGIOSGA018468 Oryza indica BGIOSGA018468 N
BGIOSGA020445 Oryza indica BGIOSGA020445 N
Bo4g107870 Brassica oleracea Bo4g107870 N
Bo4g137780 Brassica oleracea Bo4g137780 N
Bostr.20129s0513 Boechera stricta Bostr.20129s0513 N
BRADI1G09650 Brachypodium distachyon BRADI1G09650 N
BRADI1G09660 Brachypodium distachyon BRADI1G09660 N
BRADI3G16050 Brachypodium distachyon BRADI3G16050 N
BRADI3G40810 Brachypodium distachyon BRADI3G40810 N
Cagra.13611s0003 Capsella grandiflora Cagra.13611s0003 N
Cagra.1725s0137 Capsella grandiflora Cagra.1725s0137 N
Carubv10008021m.g Capsella rubella Carubv10008021m.g N
Carubv10019720m.g Capsella rubella Carubv10019720m.g N
cassava11655.m1 Manihot esculenta cassava11655.m1 N
Ciclev10007308m.g Citrus clementina Ciclev10007308m.g N
Ciclev10025036m.g Citrus clementina Ciclev10025036m.g N
Cucsa.036140 Cucumis sativus Cucsa.036140 N
Eucgr.C01383 Eucalyptus grandis Eucgr.C01383 N
Eucgr.F03885 Eucalyptus grandis Eucgr.F03885 N
fgenesh1_pm.C_scaffold_5000603 Arabidopsis lyrata fgenesh1_pm.C_scaffold_5000603 N
gene15718-v1.0-hybrid Fragaria vesca gene15718-v1.0-hybrid N
gene30791-v1.0-hybrid Fragaria vesca gene30791-v1.0-hybrid N
gene31107-v1.0-hybrid Fragaria vesca gene31107-v1.0-hybrid N
GLYMA13G22855 Glycine max GLYMA13G22855 N
GLYMA13G22881 Glycine max GLYMA13G22881 N
GLYMA17G11981 Glycine max GLYMA17G11981 N
Gorai.004G107300 Gossypium raimondii Gorai.004G107300 N
Gorai.010G061500 Gossypium raimondii Gorai.010G061500 N
Gorai.010G061600 Gossypium raimondii Gorai.010G061600 N
Gorai.010G137500 Gossypium raimondii Gorai.010G137500 N
GSMUA_Achr10G16260_001 Musa acuminata GSMUA_Achr10G16260_001 N
GSMUA_Achr3G02770_001 Musa acuminata GSMUA_Achr3G02770_001 N
GSMUA_Achr3G16690_001 Musa acuminata GSMUA_Achr3G16690_001 N
GSMUA_Achr8G29120_001 Musa acuminata GSMUA_Achr8G29120_001 N
Lus10032337.g Linum usitatissimum Lus10032337.g N
MDP0000197332 Malus domestica MDP0000197332 N
MDP0000394762 Malus domestica MDP0000394762 N
mgf025287m Mimulus guttatus mgf025287m N
MLOC_42818 Hordeum vulgare MLOC_42818 N
MLOC_66012 Hordeum vulgare MLOC_66012 N
MLOC_75540 Hordeum vulgare MLOC_75540 N
OB03G40190 Oryza brachyantha OB03G40190 N
OB08G27840 Oryza brachyantha OB08G27840 N
OB08G27850 Oryza brachyantha OB08G27850 N
orange1.1g002915m.g Citrus sinensis orange1.1g002915m.g N
orange1.1g005485m.g Citrus sinensis orange1.1g005485m.g N
ORGLA03G0300400 Oryza glaberrima ORGLA03G0300400 N
ORGLA05G0072400 Oryza glaberrima ORGLA05G0072400 N
ORGLA05G0236800 Oryza glaberrima ORGLA05G0236800 N
ORGLA05G0237000 Oryza glaberrima ORGLA05G0237000 N
OS03G0733400 Oryza sativa OS03G0733400 N
OS05G0583200 Oryza sativa OS05G0583200 N
Pavir.Ea02468 Panicum virgatum Pavir.Ea02468 N
Pavir.Eb00997 Panicum virgatum Pavir.Eb00997 N
Pavir.Eb01402 Panicum virgatum Pavir.Eb01402 N
Pavir.Ia00683 Panicum virgatum Pavir.Ia00683 N
Pavir.Ib03527 Panicum virgatum Pavir.Ib03527 N
Pavir.J05554 Panicum virgatum Pavir.J05554 N
Pavir.J31170 Panicum virgatum Pavir.J31170 N
PGSC0003DMG400002911 Solanum tuberosum PGSC0003DMG400002911 N
PGSC0003DMG400019816 Solanum tuberosum PGSC0003DMG400019816 N
PGSC0003DMG400023690 Solanum tuberosum PGSC0003DMG400023690 N
PK27100.1 Cannabis sativa PK27100.1 N
Pm013703 Prunus mume Pm013703 N
POPTR_0001s20900 Populus trichocarpa POPTR_0001s20900 N
POPTR_0003s02610 Populus trichocarpa POPTR_0003s02610 N
POPTR_0004s12760 Populus trichocarpa POPTR_0004s12760 N
POPTR_0004s12810 Populus trichocarpa POPTR_0004s12810 N
POPTR_0018s12690 Populus trichocarpa POPTR_0018s12690 N
PRUPE_ppa001983mg Prunus persica PRUPE_ppa001983mg N
PRUPE_ppa002495mg Prunus persica PRUPE_ppa002495mg N
SapurV1A.0034s0250 Salix purpurea SapurV1A.0034s0250 N
SapurV1A.0199s0250 Salix purpurea SapurV1A.0199s0250 N
SapurV1A.0344s0280 Salix purpurea SapurV1A.0344s0280 N
Sb01g009090 Sorghum bicolor Sb01g009090 N
Sb02g043380 Sorghum bicolor Sb02g043380 N
Si000401m.g Setaria italica Si000401m.g N
Si000431m.g Setaria italica Si000431m.g N
Si000761m.g Setaria italica Si000761m.g N
Si034159m.g Setaria italica Si034159m.g N
Solyc03g116840.1 Solanum lycopersicum Solyc03g116840.1 N
Solyc10g080090.1 Solanum lycopersicum Solyc10g080090.1 N
Solyc12g009640.1 Solanum lycopersicum Solyc12g009640.1 N
TCM_027266 Theobroma cacao TCM_027266 N
TCM_038144 Theobroma cacao TCM_038144 N
Traes_4AL_54F25AA7C Triticum aestivum Traes_4AL_54F25AA7C N
Traes_4AL_A494372EB Triticum aestivum Traes_4AL_A494372EB N
Traes_4BS_5B1737D7C Triticum aestivum Traes_4BS_5B1737D7C N
Traes_4BS_D5227ED8B Triticum aestivum Traes_4BS_D5227ED8B N
Traes_4DS_990D31BB1 Triticum aestivum Traes_4DS_990D31BB1 N
Traes_4DS_9C5CECE46 Triticum aestivum Traes_4DS_9C5CECE46 N
Traes_6AS_2B943BE9C Triticum aestivum Traes_6AS_2B943BE9C N
Traes_6DS_FC6D9CA6B Triticum aestivum Traes_6DS_FC6D9CA6B N
TRIUR3_10927 Triticum urartu TRIUR3_10927 N
VIT_09s0002g07340 Vitis vinifera VIT_09s0002g07340 N
VIT_11s0016g05750 Vitis vinifera VIT_11s0016g05750 N