SVUK_0000462001 (Strongylus vulgaris)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 SVUK_0000462001 T236602_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Pbx1
M09213_2.00 		Mus musculus
TGABTGRCRGV
BCYGYCAVTCA		 Misc
Kulakovskiy et al.(2013)
PBX1_MOUSE.H11MO.0.A 		0.802 0.867
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SVUK_0000462001-mRNA-1 Homeodomain 188 235

Links

Other Homeodomain family TFs
Other Strongylus vulgaris TFs

39 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACOC_0000393801 Angiostrongylus costaricensis ACOC_0000393801 I 0.688
AEPI008243 Anopheles epiroticus AEPI008243 I 0.696
ANCCEY_11361 Ancylostoma ceylanicum ANCCEY_11361 I 0.680
ANCDUO_01775 Ancylostoma duodenale ANCDUO_01775 I 0.715
A_00975 Schistosoma haematobium A_00975 I 0.797
Brh_R010078 Buceros rhinoceros Brh_R010078 I 0.813
CBG26065 Caenorhabditis briggsae CBG26065 I 0.611
D915_05491 Fasciola hepatica D915_05491 I 0.815
ENSACAG00000003721 Anolis carolinensis ENSACAG00000003721 I 0.853
CABZ01017151.1 Danio rerio ENSDARG00000104156 I 0.802
PBX1 Echinops telfairi ENSETEG00000019309 I 0.667
PBX1 Homo sapiens ENSG00000185630 D 0.802
ENSGMOG00000006428 Gadus morhua ENSGMOG00000006428 I 0.802
ENSLACG00000016442 Latimeria chalumnae ENSLACG00000016442 I 0.802
ENSLOCG00000006841 Lepisosteus oculatus ENSLOCG00000006841 I 0.802
ENSMEUG00000002971 Macropus eugenii ENSMEUG00000002971 I 0.813
ENSMEUG00000006330 Macropus eugenii ENSMEUG00000006330 I 0.820
Pbx1 Mus musculus ENSMUSG00000052534 D 0.802
PBX4 Oryctolagus cuniculus ENSOCUG00000029208 I 0.794
PBX1 Oryzias latipes ENSORLG00000016702 I 0.802
ENSSTOG00000013679 Ictidomys tridecemlineatus ENSSTOG00000013679 I 0.820
PBX3 Tupaia belangeri ENSTBEG00000016855 I 0.820
fgenesh1_pg.C_scaffold_1001003 Mycosphaerella fijiensis fgenesh1_pg.C_scaffold_1001003 I 0.620
genemark-nMf.1.1.scaf08601-processed-gene-0.1 Meloidogyne floridensis genemark-nMf.1.1.scaf08601-processed-gene-0.1 N 0.604
HmN_000400100 Hymenolepis microstoma HmN_000400100 I 0.675
LDEC006593 Leptinotarsa decemlineata LDEC006593 I 0.710
MDOA002143 Musca domestica MDOA002143 I 0.754
MESCA000707 Megaselia scalaris MESCA000707 I 0.754
MhA1_Contig138.frz3.gene24 Meloidogyne hapla MhA1_Contig138.frz3.gene24 I 0.660
MYCFIDRAFT_76128 Pseudocercospora fijiensis MYCFIDRAFT_76128 I 0.620
Myotis_brandtii_MIMI_L668_10004071 Myotis brandtii Myotis_brandtii_MIMI_L668_10004071 I 0.621
Myotis_brandtii_MIMI_R196_10004074 Myotis brandtii Myotis_brandtii_MIMI_R196_10004074 I 0.621
Ogr15448 Ophisaurus gracilis Ogr15448 I 0.802
ORUFI07G17770 Oryza rufipogon ORUFI07G17770 N 0.614
PPAI000859 Phlebotomus papatasi PPAI000859 I 0.754
PXEA_0001880101 Protopolystoma xenopodis PXEA_0001880101 I 0.680
SVUK_0001050601 Strongylus vulgaris SVUK_0001050601 I 0.633
TELCIR_02026 Teladorsagia circumcincta TELCIR_02026 I 0.727
UCRNP2_7717 Neofusicoccum parvum UCRNP2_7717 I 0.599