PGSC0003DMG400030461 (Solanum tuberosum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 PGSC0003DMG400030461 T245843_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.827 0.827
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.827 0.827
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PGSC0003DMT400078264 LOB 40 137
PGSC0003DMT400078265 LOB 40 138

Links

Other LOB family TFs
Other Solanum tuberosum TFs

182 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
29729.m002335 Ricinus communis 29729.m002335 I 0.879
29957.m001411 Ricinus communis 29957.m001411 I 0.848
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.879
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.879
LBD12 Arabidopsis thaliana AT2G30130 I 0.707
LBD13 Arabidopsis thaliana AT2G30340 D 0.828
LBD15 Arabidopsis thaliana AT2G40470 I 0.859
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.798
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.828
Bo3g024350 Brassica oleracea Bo3g024350 I 0.707
Bo3g034980 Brassica oleracea Bo3g034980 I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
Bo4g059520 Brassica oleracea Bo4g059520 I 0.828
Bo4g059700 Brassica oleracea Bo4g059700 I 0.707
Bo4g170770 Brassica oleracea Bo4g170770 I 0.707
Bo4g172950 Brassica oleracea Bo4g172950 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.763
Bo4g190210 Brassica oleracea Bo4g190210 I 0.848
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.859
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.828
Bra000188 Brassica rapa Bra000188 I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
Bra016992 Brassica rapa Bra016992 I 0.848
Bra018320 Brassica rapa Bra018320 I 0.828
Bra018335 Brassica rapa Bra018335 I 0.707
Bra021612 Brassica rapa Bra021612 I 0.707
Bra021627 Brassica rapa Bra021627 I 0.818
Bra022780 Brassica rapa Bra022780 I 0.707
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.798
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.798
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.828
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.859
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.859
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.818
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.707
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.869
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.879
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.859
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Ca_12420 Cicer arietinum Ca_12420 I 0.838
Ca_15642 Cicer arietinum Ca_15642 I 0.869
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.848
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.848
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.848
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.707
Cla007391 Citrullus lanatus Cla007391 I 0.869
Cla009336 Citrullus lanatus Cla009336 I 0.707
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.869
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.818
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.838
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.869
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.766
F775_25790 Aegilops tauschii F775_25790 I 0.808
F775_33210 Aegilops tauschii F775_33210 I 0.726
F775_52636 Aegilops tauschii F775_52636 I 0.808
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.818
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.859
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.707
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.869
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.838
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.889
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.859
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.899
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.869
Gorai.011G051200 Gossypium raimondii Gorai.011G051200 I 0.707
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.838
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.859
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.704
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.707
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.798
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.838
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.828
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.788
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.778
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.808
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.808
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.804
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.798
LPERR03G23450 Leersia perrieri LPERR03G23450 I 0.717
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.808
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.869
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.879
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
MDP0000167580 Malus domestica MDP0000167580 I 0.800
MDP0000278334 Malus domestica MDP0000278334 I 0.838
mgf011471m Mimulus guttatus mgf011471m I 0.899
mgf020556m Mimulus guttatus mgf020556m I 0.828
mgf026046m Mimulus guttatus mgf026046m I 0.717
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.808
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.808
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.838
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.859
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.788
OB05G14280 Oryza brachyantha OB05G14280 I 0.874
OBART01G35680 Oryza barthii OBART01G35680 I 0.798
OBART05G04570 Oryza barthii OBART05G04570 I 0.828
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.798
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.798
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.758
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.798
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.798
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.828
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.788
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.848
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.848
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.707
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.798
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.798
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.798
OS05G0165450 Oryza sativa OS05G0165450 I 0.828
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.838
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.788
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.808
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.848
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.717
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.717
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.768
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.712
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.707
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.869
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.869
PK03716.1 Cannabis sativa PK03716.1 I 0.765
PK17019.1 Cannabis sativa PK17019.1 I 0.706
PK17217.1 Cannabis sativa PK17217.1 I 0.879
PK21617.1 Cannabis sativa PK21617.1 I 0.935
PK29334.1 Cannabis sativa PK29334.1 I 0.703
Pm000277 Prunus mume Pm000277 I 0.828
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.707
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.859
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.889
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.859
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.848
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.717
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.889
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.859
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.818
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
Si004575m.g Setaria italica Si004575m.g I 0.808
Si012018m.g Setaria italica Si012018m.g I 0.859
Si037583m.g Setaria italica Si037583m.g I 0.727
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.869
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.990
TCM_042262 Theobroma cacao TCM_042262 I 0.879
TCM_045438 Theobroma cacao TCM_045438 I 0.869
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.828
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.848
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.798
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.808
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.808
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.808
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.849
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.808
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.818
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.869